Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:F3 8.9075400
2L:L:M6 3.32400
3L:L:L8 3.384500
4L:L:?9 4.546510
5L:L:R10 7.15333600
6R:R:F44 4.1075417
7R:R:N55 8.6625409
8R:R:W74 5.476507
9R:R:N77 5.0275469
10R:R:L89 3.648517
11R:R:W102 4.225628
12R:R:C109 4.6775429
13R:R:F135 7.3025488
14R:R:F139 9.0125487
15R:R:R148 5.454537
16R:R:W161 4.112509
17R:R:I169 2.63403
18R:R:R175 4.43333625
19R:R:P183 4.7075404
20R:R:F211 3.925418
21R:R:Y222 7.538578
22R:R:F251 3.088509
23R:R:F254 5.48548
24R:R:W255 4.655619
25R:R:Y258 4.41167617
26R:R:Q259 4.53418
27R:R:S272 3.805494
28R:R:L278 3.595404
29R:R:S287 4.905404
30R:R:Y290 4.08333617
31R:R:N292 5.174509
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:K4 R:R:F275 10.88436.2NoNo003
2R:R:F275 R:R:S272 16.27693.96NoYes034
3R:R:S272 R:R:T274 21.58153.2YesNo941
4R:R:L278 R:R:T274 26.93012.95YesNo041
5R:R:L278 R:R:M265 38.79935.65YesNo044
6L:L:M6 R:R:M265 23.11672.89YesNo004
7L:L:M6 R:R:V190 10.42214.56YesNo005
8R:R:G189 R:R:R175 10.16343NoYes045
9L:L:M6 L:L:R10 24.82252.48YesYes000
10L:L:R10 R:R:D282 20.161815.48YesNo004
11R:R:D282 R:R:M265 18.16435.54NoNo044
12L:L:?9 L:L:L8 45.67774.22YesYes000
13L:L:?9 R:R:Y290 63.06063.58YesYes107
14L:L:R10 R:R:Y258 20.167313.38YesYes007
15R:R:F104 R:R:W102 27.06764.01NoYes278
16R:R:F104 R:R:P103 25.41681.44NoNo073
17R:R:H101 R:R:P103 23.672510.68NoNo043
18R:R:L89 R:R:Y290 98.03562.34YesYes177
19R:R:C86 R:R:L89 97.21013.17NoYes157
20R:R:C86 R:R:G51 1001.96NoNo058
21R:R:G51 R:R:N55 99.69731.7NoYes089
22R:R:D82 R:R:N55 90.799517.5NoYes099
23R:R:N55 R:R:P297 25.328813.03YesNo099
24R:R:P297 R:R:V58 24.00261.77NoNo098
25R:R:V58 R:R:Y300 19.94723.79NoNo089
26R:R:T62 R:R:Y300 17.29493.75NoNo069
27R:R:T62 R:R:V61 14.51051.59NoNo066
28R:R:F307 R:R:V61 10.3456.55NoNo096
29R:R:C293 R:R:D82 90.25487.78NoNo089
30R:R:C293 R:R:S85 89.6991.72NoNo086
31R:R:N119 R:R:S85 89.13224.47NoNo096
32R:R:N119 R:R:W161 87.36592.26NoYes099
33R:R:N77 R:R:W161 61.21725.65YesYes099
34R:R:N77 R:R:W154 58.43832.26YesNo093
35R:R:I73 R:R:W154 56.490417.62NoNo063
36R:R:A153 R:R:I73 55.46144.87NoNo076
37R:R:A153 R:R:W74 54.42145.19NoYes077
38R:R:I130 R:R:W74 44.62114.7NoYes087
39R:R:H101 R:R:V186 14.78575.54NoNo046
40R:R:L118 R:R:W161 33.15912.28NoYes059
41R:R:M120 R:R:Y290 41.00043.59NoYes177
42R:R:W255 R:R:Y258 12.16091.93YesYes197
43R:R:L118 R:R:L165 24.10721.38NoNo054
44R:R:I169 R:R:L165 22.772.85YesNo034
45R:R:I169 R:R:P170 10.3563.39YesNo038
46R:R:I124 R:R:W255 11.65479.4NoYes089
47R:R:Q259 R:R:Y258 20.24432.25YesYes187
48R:R:N292 R:R:W255 18.44497.91YesYes099
49R:R:I130 R:R:R134 41.1825.01NoNo089
50R:R:R134 R:R:Y222 40.07045.14NoYes098
51R:R:S131 R:R:Y222 21.344912.72NoYes798
52R:R:C221 R:R:S131 20.06823.44NoNo069
53R:R:C221 R:R:F135 18.69814.19NoYes068
54R:R:F135 R:R:I225 10.18542.51YesNo088
55R:R:I169 R:R:L173 10.24052.85YesNo034
56R:R:E179 R:R:V186 12.97538.56NoNo026
57R:R:E179 R:R:P184 11.15397.86NoNo025
58R:R:L207 R:R:Q259 22.31336.65NoYes058
59R:R:I263 R:R:L207 19.5621.43NoNo055
60R:R:I204 R:R:I263 16.79961.47NoNo035
61R:R:V248 R:R:Y222 10.03142.52NoYes078
62L:L:?9 L:L:R10 43.77924.94YesYes000
63L:L:L8 R:R:W102 31.9873.42YesYes008
64R:R:M120 R:R:W255 32.33373.49NoYes179
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:Y1 R:R:D195 11.49 0 No No 0 3 0 1
L:L:S2 R:R:D191 8.83 0 No No 0 4 0 1
L:L:F3 R:R:R178 20.31 0 Yes No 0 2 0 1
L:L:F3 R:R:L187 2.44 0 Yes No 0 4 0 1
L:L:F3 R:R:G189 4.52 0 Yes No 0 4 0 1
L:L:F3 R:R:D191 8.36 0 Yes No 0 4 0 1
L:L:K4 R:R:P270 6.69 0 No No 0 3 0 1
L:L:K4 R:R:F275 6.2 0 No No 0 3 0 1
L:L:M6 R:R:V190 4.56 0 Yes No 0 5 0 1
L:L:M6 R:R:M265 2.89 0 Yes No 0 4 0 1
L:L:P7 R:R:D282 9.66 0 No No 0 4 0 1
L:L:L8 R:R:I91 2.85 0 Yes No 0 6 0 1
L:L:L8 R:R:W102 3.42 0 Yes Yes 0 8 0 1
L:L:L8 R:R:P113 4.93 0 Yes No 0 6 0 1
L:L:?9 R:R:L92 5.63 1 Yes No 0 6 0 1
L:L:?9 R:R:I116 4.36 1 Yes No 0 6 0 1
L:L:?9 R:R:Y290 3.58 1 Yes Yes 0 7 0 1
L:L:R10 R:R:L117 3.64 0 Yes No 0 4 0 1
L:L:R10 R:R:Y258 13.38 0 Yes Yes 0 7 0 1
L:L:R10 R:R:G262 3 0 Yes No 0 5 0 1
L:L:R10 R:R:D282 15.48 0 Yes No 0 4 0 1
R:R:F44 R:R:L89 2.44 1 Yes Yes 7 7 2 2
R:R:F44 R:R:L92 4.87 1 Yes No 7 6 2 1
R:R:F44 R:R:Y290 5.16 1 Yes Yes 7 7 2 1
R:R:A88 R:R:I116 3.25 0 No No 6 6 2 1
R:R:L89 R:R:Y290 2.34 1 Yes Yes 7 7 2 1
R:R:L92 R:R:Y290 3.52 1 No Yes 6 7 1 1
R:R:F104 R:R:W102 4.01 2 No Yes 7 8 2 1
R:R:A108 R:R:W102 3.89 2 No Yes 5 8 2 1
R:R:C109 R:R:W102 5.22 2 Yes Yes 9 8 2 1
R:R:L112 R:R:W102 2.28 0 No Yes 5 8 2 1
R:R:C188 R:R:W102 6.53 2 No Yes 9 8 2 1
R:R:A108 R:R:F104 4.16 2 No No 5 7 2 2
R:R:C109 R:R:R175 2.79 2 Yes Yes 9 5 2 2
R:R:C109 R:R:C188 7.28 2 Yes No 9 9 2 2
R:R:P113 R:R:S171 1.78 0 No No 6 5 1 2
R:R:P113 R:R:R175 7.21 0 No Yes 6 5 1 2
R:R:L117 R:R:S171 3 0 No No 4 5 1 2
R:R:M120 R:R:W255 3.49 1 No Yes 7 9 2 2
R:R:M120 R:R:Y258 2.39 1 No Yes 7 7 2 1
R:R:M120 R:R:Y290 3.59 1 No Yes 7 7 2 1
R:R:C188 R:R:R175 8.36 2 No Yes 9 5 2 2
R:R:G189 R:R:R175 3 0 No Yes 4 5 1 2
R:R:R175 R:R:V190 3.92 2 Yes No 5 5 2 1
R:R:D195 R:R:H194 16.39 0 No No 3 1 1 2
R:R:W255 R:R:Y258 1.93 1 Yes Yes 9 7 2 1
R:R:Q259 R:R:W255 2.19 1 Yes Yes 8 9 2 2
R:R:Q259 R:R:Y258 2.25 1 Yes Yes 8 7 2 1
R:R:V286 R:R:Y258 2.52 0 No Yes 5 7 2 1
R:R:A289 R:R:Y258 4 0 No Yes 8 7 2 1
R:R:L278 R:R:M265 5.65 0 Yes No 4 4 2 1
R:R:D282 R:R:M265 5.54 0 No No 4 4 1 1
R:R:E269 R:R:P270 3.14 0 No No 3 3 2 1
R:R:F275 R:R:S272 3.96 0 No Yes 3 4 1 2
R:R:F275 R:R:K279 3.72 0 No No 3 4 1 2
R:R:V286 R:R:Y290 6.31 0 No Yes 5 7 2 1
R:R:S95 R:R:T94 1.6 0 No No 4 3 1 2
L:L:L8 R:R:S95 1.5 0 Yes No 0 4 0 1
R:R:D191 R:R:V176 1.46 0 No No 4 4 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9UMX_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 1.7
Number of Linked Nodes 271
Number of Links 290
Number of Hubs 31
Number of Links mediated by Hubs 123
Number of Communities 10
Number of Nodes involved in Communities 45
Number of Links involved in Communities 55
Path Summary
Number Of Nodes in MetaPath 65
Number Of Links MetaPath 64
Number of Shortest Paths 36607
Length Of Smallest Path 3
Average Path Length 15.6095
Length of Longest Path 37
Minimum Path Strength 1.345
Average Path Strength 4.85707
Maximum Path Strength 15.265
Minimum Path Correlation 0.7
Average Path Correlation 0.932172
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.57143
Average % Of Corr. Nodes 57.6352
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 39.5593
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeDAL
PDB ResiduesL:L:?9
Environment DetailsOpen EMBL-EBI Page
CodeDAL
NameD-Alanine
SynonymsD-Alanine
Identifier
FormulaC3 H7 N O2
Molecular Weight89.093
SMILES
PubChem71080
Formal Charge0
Total Atoms13
Total Chiral Atoms1
Total Bonds12
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP21730
Sequence
>9UMX_nogp_Chain_R
TLRVPDILA LVIFAVVFL VGVLGNALV VWVTAFEAK RTINAIWFL 
NLAVADFLS CLALPILFT SIVQHHHWP FGGAACSIL PSLILLNMY 
ASILLLATI SADRFLLVF KPIWCQNFR GAGLAWIAC AVAWGLALL 
LTIPSFLYR VVREEYFPP KVLCGVDYS HDKRRERAV AIVRLVLGF 
LWPLLTLTI CYTFILLRT WSRRATRST KTLKVVVAV VASFFIFWL 
PYQVTGIMM SFLEPSSPT FLLLKKLDS LCVSFAYIN CCINPIIYV 
VAGQGFQGR LRKS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5O9HAPeptideComplement PeptideC5a1Homo sapiens-NDT9513727-2.72018-01-10doi.org/10.1038/nature25025
6C1QAPeptideComplement PeptideC5a1Homo sapiensPMX53NDT9513727-2.92018-05-30doi.org/10.1038/s41594-018-0067-z
6C1RAPeptideComplement PeptideC5a1Homo sapiensPMX53Avacopan; Na-2.22018-05-30doi.org/10.1038/s41594-018-0067-z
7Y64APeptideComplement PeptideC5a1Homo sapiensC5a-Gi1/β1/γ22.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y64 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a-2.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y65APeptideComplement PeptideC5a1Homo sapiensC5a (C-terminal peptide)-Gi1/β1/γ23.22023-03-01doi.org/10.1038/s41422-023-00779-2
7Y65 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a (C-terminal peptide)-3.22023-03-01doi.org/10.1038/s41422-023-00779-2
7Y66APeptideComplement PeptideC5a1Homo sapiensBM213-Gi1/β1/γ22.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y66 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensBM213-2.92023-03-01doi.org/10.1038/s41422-023-00779-2
7Y67APeptideComplement PeptideC5a1Homo sapiensC089 peptide-Gi1/β1/γ22.82023-03-01doi.org/10.1038/s41422-023-00779-2
7Y67 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC089 peptide-2.82023-03-01doi.org/10.1038/s41422-023-00779-2
8HK5APeptideComplement PeptideC5a1Homo sapiensC5a-Gi1/β1/γ232023-05-10doi.org/10.1038/s41589-023-01339-w
8HK5 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a-32023-05-10doi.org/10.1038/s41589-023-01339-w
8HPTAPeptideComplement PeptideC5a1Mus musculusC5a (C-terminal peptide)-Go/β1/γ23.392023-10-18doi.org/10.1016/j.cell.2023.09.020
8HPT (No Gprot) APeptideComplement PeptideC5a1Mus musculusC5a (C-terminal peptide)-3.392023-10-18doi.org/10.1016/j.cell.2023.09.020
8HQCAPeptideComplement PeptideC5a1Mus musculusC5a-Go/β1/γ23.892023-10-18doi.org/10.1016/j.cell.2023.09.020
8HQC (No Gprot) APeptideComplement PeptideC5a1Mus musculusC5a-3.892023-10-18doi.org/10.1016/j.cell.2023.09.020
8IA2APeptideComplement PeptideC5a1Homo sapiensC5a-Go/β1/γ23.212023-10-18doi.org/10.1016/j.cell.2023.09.020
8IA2 (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a-3.212023-10-18doi.org/10.1016/j.cell.2023.09.020
8JZZAPeptideComplement PeptideC5a1Homo sapiensC5a-des-Arg-Go/β1/γ23.312023-10-18doi.org/10.1016/j.cell.2023.09.020
8JZZ (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a-des-Arg-3.312023-10-18doi.org/10.1016/j.cell.2023.09.020
9KWGAPeptideComplement PeptideC5a1Mus musculusC5a-Go/β1/γ23.152025-11-2610.1101/2025.05.26.656101
9KWG (No Gprot) APeptideComplement PeptideC5a1Mus musculusC5a-3.152025-11-2610.1101/2025.05.26.656101
9KWXAPeptideComplement PeptideC5a1Mus musculusC5a-des-Arg-Go/β1/γ23.132025-11-2610.1101/2025.05.26.656101
9KWX (No Gprot) APeptideComplement PeptideC5a1Mus musculusC5a-des-Arg-3.132025-11-2610.1101/2025.05.26.656101
9KX6APeptideComplement PeptideC5a1Mus musculusC5a-des-Arg-Go/β1/γ23.112025-11-2610.1101/2025.05.26.656101
9KX6 (No Gprot) APeptideComplement PeptideC5a1Mus musculusC5a-des-Arg-3.112025-11-2610.1101/2025.05.26.656101
9KXSAPeptideComplement PeptideC5a1Mus musculusEP67-Go/β1/γ23.312025-11-2610.1101/2025.05.26.656101
9KXS (No Gprot) APeptideComplement PeptideC5a1Mus musculusEP67-3.312025-11-2610.1101/2025.05.26.656101
9UMRAPeptideComplement PeptideC5a1Homo sapiensC5a-pep-Go/β1/γ23.152025-11-2610.1101/2025.05.26.656101
9UMR (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a-pep-3.152025-11-2610.1101/2025.05.26.656101
9UMXAPeptideComplement PeptideC5a1Homo sapiensEP54-Go/β1/γ23.22025-11-2610.1101/2025.05.26.656101
9UMX (No Gprot) APeptideComplement PeptideC5a1Homo sapiensEP54-3.22025-11-2610.1101/2025.05.26.656101
8JZPAPeptideComplement PeptideC5a1Homo sapiensC5a-Go/β1/γ23.542025-01-15To be published
8JZP (No Gprot) APeptideComplement PeptideC5a1Homo sapiensC5a-3.542025-01-15To be published
9KUGAPeptideComplement PeptideC5a1Homo sapiensEP67-Go/β1/γ23.072025-11-2610.1101/2025.05.26.656101
9KUG (No Gprot) APeptideComplement PeptideC5a1Homo sapiensEP67-3.072025-11-2610.1101/2025.05.26.656101




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9UMX_nogp.zip



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