Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:P52 3.2725405
2R:R:Y55 8.8125418
3R:R:N66 6.8675409
4R:R:V72 4.7825427
5R:R:Y73 14.8625407
6R:R:Y75 5.06445
7R:R:R78 9.726526
8R:R:M85 5.59457
9R:R:F86 6.35407
10R:R:F97 7.138517
11R:R:W104 6.076516
12R:R:M118 4.1875406
13R:R:Y126 6.47875817
14R:R:N129 4.8525418
15R:R:F130 6.75143718
16R:R:D143 7.82428
17R:R:R144 8.31529
18R:R:Y145 7.1625408
19R:R:S165 4.4575407
20R:R:F223 5.38408
21R:R:F263 5.982519
22R:R:Q267 6.62167619
23R:R:Y270 10.4433617
24R:R:Y282 5.3825401
25R:R:F285 6.405461
26R:R:I286 6.2925462
27R:R:F299 7.11414
28R:R:Q303 10.244516
29R:R:F307 12.1525417
30R:R:F308 4.795436
31R:R:H309 6.912519
32R:R:S310 6.075419
33R:R:Y317 8.095429
34R:R:F324 6.0825428
35W:W:?1 8.681420
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:Y126 R:R:Y270 35.336512.91YesYes177
2R:R:F97 R:R:Y126 18.85654.13YesYes177
3R:R:F97 R:R:L101 14.04574.87YesNo078
4R:R:F307 R:R:Q303 11.432714.05YesYes176
5R:R:Q303 R:R:W104 25.66518.76YesYes166
6R:R:D94 R:R:N129 10.37855.39NoYes198
7R:R:D94 R:R:N66 13.246610.77NoYes099
8R:R:Q267 R:R:Y126 54.58469.02YesYes197
9R:R:H309 R:R:Q267 83.05993.71YesYes199
10R:R:H309 R:R:N313 1005.1YesNo099
11R:R:N313 R:R:Y317 54.660910.47NoYes099
12R:R:A306 R:R:Y270 24.81864NoYes187
13R:R:A306 R:R:Q267 25.22084.55NoYes189
14R:R:N313 R:R:V259 45.15775.91NoNo098
15R:R:V259 W:W:?1 44.75034.07NoYes080
16R:R:Y73 W:W:?1 17.12934.48YesYes070
17R:R:L88 R:R:Y73 12.91817.58NoYes057
18R:R:Y317 W:W:?1 44.726610.89YesYes290
19R:R:A82 R:R:D143 28.14676.18NoYes068
20R:R:D143 R:R:T83 20.36547.23YesNo288
21R:R:T83 W:W:?1 21.67197.25NoYes280
22R:R:D143 R:R:R144 21.61935.96YesYes289
23R:R:R144 W:W:?1 22.978411.95YesYes290
24R:R:A82 R:R:S165 25.37073.42NoYes067
25R:R:I92 R:R:L88 10.06834.28NoNo065
26R:R:F86 R:R:S165 11.36445.28YesYes077
27R:R:F130 R:R:Y126 11.6226.19YesYes187
28R:R:F130 R:R:F263 10.7653.22YesYes189
29R:R:C133 R:R:F263 13.38335.59NoYes099
30R:R:V122 R:R:W104 20.628311.03NoYes056
31R:R:T100 R:R:V122 18.06784.76NoNo075
32R:R:M118 R:R:W104 10.35493.49YesYes066
33R:R:M125 R:R:T100 12.93113.01NoNo057
34R:R:F130 R:R:V134 20.35235.24YesNo088
35R:R:V134 R:R:V229 19.12993.21NoNo087
36R:R:M138 R:R:V229 17.91544.56NoNo077
37R:R:C233 R:R:M138 16.74823.24NoNo077
38R:R:D143 R:R:R161 11.395911.91YesNo087
39R:R:T256 W:W:?1 22.57897.25NoYes270
40R:R:T240 R:R:Y145 10.2349.99NoYes058
41R:R:I148 R:R:T240 11.49053.04NoNo085
42R:R:I148 R:R:L253 16.51424.28NoNo086
43R:R:L253 R:R:T256 22.74454.42NoNo067
44R:R:L274 R:R:Y270 30.165616.41NoYes067
45R:R:F223 R:R:L274 28.90122.44YesNo086
46R:R:F223 R:R:L275 25.086812.18YesNo086
47R:R:L275 R:R:V219 10.77811.49NoNo066
48R:R:I279 R:R:L275 13.44374.28NoNo046
49R:R:F285 R:R:I279 10.77813.77YesNo014
50R:R:F307 R:R:Y55 14.647714.44YesYes178
51R:R:W104 R:R:Y55 10.02895.79YesYes168
52R:R:F307 R:R:Y126 20.99896.19YesYes177
53R:R:Q303 R:R:Y270 17.381716.91YesYes167
54R:R:F263 R:R:H309 18.51479.05YesYes199
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F324 R:R:V72 5.24 2 Yes Yes 8 7 1 2
R:R:W74 R:R:Y73 13.5 0 No Yes 4 7 2 1
R:R:K80 R:R:Y73 23.89 0 No Yes 7 7 2 1
R:R:L88 R:R:Y73 17.58 0 No Yes 5 7 2 1
R:R:Y73 W:W:?1 4.48 0 Yes Yes 7 0 1 0
R:R:C76 R:R:R78 4.18 2 No Yes 6 6 2 1
R:R:C76 R:R:K80 4.85 2 No No 6 7 2 2
R:R:C76 R:R:D327 6.22 2 No No 6 4 2 2
R:R:D84 R:R:R78 10.72 2 No Yes 8 6 1 1
R:R:R323 R:R:R78 14.93 2 No Yes 6 6 1 1
R:R:D327 R:R:R78 15.48 2 No Yes 4 6 2 1
R:R:R78 W:W:?1 3.32 2 Yes Yes 6 0 1 0
R:R:D84 R:R:T81 10.12 2 No No 8 7 1 1
R:R:T81 W:W:?1 4.83 2 No Yes 7 0 1 0
R:R:D143 R:R:T83 7.23 2 Yes No 8 8 2 1
R:R:R144 R:R:T83 11.64 2 Yes No 9 8 1 1
R:R:T83 W:W:?1 7.25 2 No Yes 8 0 1 0
R:R:D84 W:W:?1 14.09 2 No Yes 8 0 1 0
R:R:L87 R:R:Y317 5.86 2 No Yes 8 9 1 1
R:R:L87 W:W:?1 15.13 2 No Yes 8 0 1 0
R:R:D143 R:R:R144 5.96 2 Yes Yes 8 9 2 1
R:R:A147 R:R:R144 5.53 0 No Yes 8 9 2 1
R:R:R144 R:R:T256 6.47 2 Yes No 9 7 1 1
R:R:R144 W:W:?1 11.95 2 Yes Yes 9 0 1 0
R:R:L253 R:R:T256 4.42 0 No No 6 7 2 1
R:R:A255 W:W:?1 8.61 0 No Yes 8 0 1 0
R:R:T256 W:W:?1 7.25 2 No Yes 7 0 1 0
R:R:N313 R:R:V259 5.91 0 No No 9 8 2 1
R:R:V259 W:W:?1 4.07 0 No Yes 8 0 1 0
R:R:N313 R:R:Y317 10.47 0 No Yes 9 9 2 1
R:R:F324 R:R:Y317 5.16 2 Yes Yes 8 9 1 1
R:R:Y317 W:W:?1 10.89 2 Yes Yes 9 0 1 0
R:R:G321 W:W:?1 3.74 0 No Yes 8 0 1 0
R:R:D327 R:R:R323 5.96 2 No No 4 6 2 1
R:R:R323 W:W:?1 14.6 2 No Yes 6 0 1 0
R:R:F324 W:W:?1 11.31 2 Yes Yes 8 0 1 0
R:R:F324 R:R:V318 2.62 2 Yes No 8 7 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

ShowSimilarityNetwork TypeNameLigandDescription
100.00Consensusccr9_off_alloOther Ligand5LWE-CCR9-Vercirnon
73.33Single6LFLPubChem 1534669966LFL-CXCR2-PubChem 153466996
57.14Single5T1APubChem 68764898; PubChem 120931705T1A-CCR2-PubChem 68764898; PubChem 12093170
47.06Single6QZHHY-133073; Na6QZH-CCR7-HY-133073; Na
47.06Consensusccr7_off_alloOther Ligand6QZH-CCR7-HY-133073; Na
41.18Single5X7DPubChem 1293189635X7D-β2-(S)-Carazolol-PubChem 129318963
38.89Single8JPFPubChem 1186104278JPF-NTS1-Neurotensin-PubChem 118610427
36.84Single8JPCPubChem 118610427; GDP; Mg8JPC-NTS1-Neurotensin 8-13-PubChem 118610427; GDP; Mg-Gq; GRK2
35.71Consensusccr2_off_alloOther Ligand5T1A-CCR2-PubChem 68764898; PubChem 12093170 6GPX-CCR2-MK0812
30.00Single8FN0PubChem 1186104278FN0-NTS1-Neurotensin/neuromedin N-PubChem 118610427-chim(NtGi1-Go)/&β;1/&γ;2
28.57Single8JPBPubChem 118610427; GDP; Mg8JPB-NTS1-Neurotensin 8-13-PubChem 118610427; GDP; Mg-Gq; GRK2
27.78Consensusnts1_on_alloOther Ligand8JPB-NTS1-Neurotensin 8-13-PubChem 118610427; GDP; Mg-Gq; GRK2
21.74Single8TB7PubChem 1685102188TB7-GPR61-PubChem 168510218
21.05Single6KK1PubChem 681786306KK1-GLP-1-PubChem 68178630
20.00Single3VG9Antibody3VG9-A2A-ZM241385-Antibody
19.05Single8JR9PCO3718JR9-PTH1-PCO371-chim(NtGi1-Gs)/&β;1/&γ;2
18.75Single3VGAAntibody3VGA-A2A-ZM241385-Antibody
18.18Single8GW8KHF8GW8-PTH1-KHF-Gs/&β;1/&γ;2
13.04Single5XF1NNC06405XF1-Glucagon-NNC0640
12.50Single4PXFOctyl Beta-D-Glucopyranoside4PXF-Rhodopsin-Octyl Beta-D-Glucopyranoside-Arrestin1_Finger_loop
10.00Single5VEXNNC06405VEX-GLP-1-NNC0640
10.00Single6KK7PubChem 681786306KK7-GLP-1-PubChem 68178630
9.52Single6KJVPubChem 681786306KJV-GLP-1-PubChem 68178630
9.09Single5VEWPF-063722225VEW-GLP-1-PF-06372222
8.70Single5XEZNNC06405XEZ-Glucagon-NNC0640
8.33Consensusffa3_on_alloOther Ligand8J20-FFA3-Valeric acid-AR420626-Gi1/&β;1/&γ;2
8.00Single6LN2PubChem 681786306LN2-GLP-1-PubChem 68178630
8.00Single8J20AR4206268J20-FFA3-Valeric acid-AR420626-Gi1/&β;1/&γ;2
5.26Single7EB2rac-BHFF7EB2-GABAB1, GABAB2-Baclofen-rac-BHFF-Gi1/&β;1/&γ;2
5.26Consensusclass-c_onOther Ligandgabab_on mglu_on
5.26Consensusgabab_onOther Ligand7EB2-GABAB1, GABAB2-Baclofen-rac-BHFF-Gi1/&β;1/&γ;2
5.26Consensusgi_class-cOther Ligandgi_mglu gi_gaba
5.00Consensusgi_gabaOther Ligand7EB2-GABAB1, GABAB2-Baclofen-rac-BHFF-Gi1/&β;1/&γ;2
4.76Single7CA3rac-BHFF7CA3-GABAB1, GABAB2-rac-BHFF
4.55Single4K5YCP-3763954K5Y-CRF1-CP-376395
4.55Single7C7QPubChem 70238487C7Q-GABAB1, GABAB2-Baclofen-PubChem 7023848
4.35Single7EJX(1R;2R)-2-PCCA7EJX-GPR88-(1R;2R)-2-PCCA-Gi1/&β;1/&γ;2
4.17Single4Z9GCP-3763954Z9G-CRF1-CP-376395
4.17Single8GTIBMK-C2058GTI-CRF1-BMK-C205
4.00Single8GTGBMK-I1528GTG-CRF1-BMK-I152
3.70Single8GTMBMK-C2038GTM-CRF1-BMK-C203
3.57Single8JD3HZR; PEF8JD3-mGlu2; mGlu3-Glutamate-HZR; PEF-Gi1/&β;1/&γ;2

PDB Summary
PDB 5LWE
Class A
SubFamily Protein
Type Chemokine
SubType CCR9
Species Homo sapiens
Ligand -
Other Ligand(s) Vercirnon
Protein Partners -
PDB Resolution 2.8
Date 2016-12-07
D.O.I. 10.1038/nature20606
Net Summary
Imin 3.21
Number of Linked Nodes 254
Number of Links 279
Number of Hubs 35
Number of Links mediated by Hubs 134
Number of Communities 6
Number of Nodes involved in Communities 47
Number of Links involved in Communities 70
Path Summary
Number Of Nodes in MetaPath 55
Number Of Links MetaPath 54
Number of Shortest Paths 60163
Length Of Smallest Path 3
Average Path Length 12.5792
Length of Longest Path 24
Minimum Path Strength 1.305
Average Path Strength 6.55975
Maximum Path Strength 20.735
Minimum Path Correlation 0.7
Average Path Correlation 0.935865
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5.88235
Average % Of Corr. Nodes 56.0624
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 48.6812
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code79K
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
Code79K
NameVercirnon
SynonymsVercirnon
Identifier4-~{tert}-butyl-~{N}-[4-chloranyl-2-(1-oxidanidylpyridin-1-ium-4-yl)carbonyl-phenyl]benzenesulfonamide
FormulaC22 H21 Cl N2 O4 S
Molecular Weight444.931
SMILESCC(C)(C)c1ccc(cc1)S(=O)(=O)Nc2ccc(cc2C(=O)c3cc[n+](cc3)[O-])Cl
PubChem10343454
Formal Charge0
Total Atoms51
Total Chiral Atoms0
Total Bonds53
Total Aromatic Bonds18

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP51686
Sequence
>5LWE_Chain_R
NFEDFYCEK NNVRQFASH FLPPLYWLV FIVGALGNS LVILVYWYC 
ARAKTATDM FLLNLAIAD LLFLVTLPF WAIAAATFM CKVVNSMYK 
MNFYSCVLL IMCICVDRY IAIAQAMRA HTWREKRLL YSKMVCFTI 
WVLAAALCI PEILTKLKS AVLALKVIL GFFLPFVVM ACCYTIIIH 
TLIQAKKSS KHKALKATI TVLTVFVLS QFPYNCILL VQTIDAYAM 
FISNCAVST AIDICFQVT QAIAFFHSC LNPVLYVFV GERFRRDLV 
KTLKNLGAI SQAAAH


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  



This network is also present in following consensuses:
IdComponents
ccr9_off_allo5LWE-CCR9-Vercirnon

This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
5LWEAProteinChemokineCCR9Homo sapiens-Vercirnon-2.82016-12-0710.1038/nature20606




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 5LWE.zip



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