Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:T4 5.2575426
2R:R:F9 6.79833627
3R:R:N15 10.99427
4R:R:V20 5.394526
5R:R:S22 8.3575425
6R:R:F24 6.03143725
7R:R:Y29 5.93474
8R:R:Y30 9.1175424
9R:R:F37 3.862575
10R:R:F52 3.2775406
11R:R:V61 4.0025447
12R:R:T62 3.37407
13R:R:H65 5.902545
14R:R:I75 3.735407
15R:R:N78 4.57333639
16R:R:F91 5.985407
17R:R:F103 4.62628
18R:R:V104 4.6175424
19R:R:F105 5.09527
20R:R:F115 2.655436
21R:R:E122 8.5775416
22R:R:I123 3.51637
23R:R:L125 5.518517
24R:R:W126 7.98571715
25R:R:V129 4.244517
26R:R:L131 8.3154119
27R:R:Y136 6.545137
28R:R:F148 3.52833607
29R:R:W161 3.45333639
30R:R:P170 6.2525417
31R:R:W175 7.1775415
32R:R:Y178 8.7175403
33R:R:P180 5.775423
34R:R:M183 4.8675402
35R:R:C187 4.42429
36R:R:D190 5.4525414
37R:R:Y191 8.2375406
38R:R:Y192 7.045415
39R:R:T193 6.215415
40R:R:N200 4.6414
41R:R:F203 6.185616
42R:R:Y206 4.725414
43R:R:M207 7.084515
44R:R:H211 6.8675816
45R:R:F212 3.118518
46R:R:P215 4.3125419
47R:R:L216 4.3675417
48R:R:Y223 4.2625409
49R:R:E247 6.0475407
50R:R:V250 1.5725458
51R:R:Y257 7.3975408
52R:R:F261 3.638509
53R:R:W265 4.984518
54R:R:Y268 6.252516
55R:R:F283 6.284564
56R:R:F293 4.1375495
57R:R:Y306 9.44509
58R:R:F313 5.225448
59R:R:C316 4.9175445
60R:R:N326 6.755643
61L:L:?1 5.61778910
62H:H:?1 13.875620
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1H:H:?1 R:R:F9 26.6872.19YesYes207
2R:R:F24 R:R:F9 32.54372.14YesYes257
3R:R:F103 R:R:F24 24.29474.29YesYes285
4R:R:C187 R:R:F103 57.78332.79YesYes298
5R:R:C187 R:R:G188 91.54331.96YesNo095
6R:R:E181 R:R:G188 92.17654.91NoNo045
7R:R:E181 R:R:Y192 93.45313.37NoYes045
8R:R:F24 R:R:P180 20.55555.78YesYes253
9R:R:C187 R:R:P180 33.09665.65YesYes293
10R:R:P180 R:R:Q184 13.19447.9YesNo033
11R:R:F103 R:R:F105 35.91449.65YesYes287
12R:R:F105 R:R:V104 24.97495.24YesYes274
13R:R:V104 R:R:Y102 22.72333.79YesNo244
14R:R:P27 R:R:Y102 21.708111.13NoNo084
15R:R:P27 R:R:Y29 20.55892.78NoYes084
16R:R:F37 R:R:Y29 12.18258.25YesYes754
17R:R:Y191 R:R:Y192 98.803918.86YesYes065
18L:L:?1 R:R:Y191 1005.46YesYes006
19L:L:?1 R:R:K296 63.49937.5YesNo007
20R:R:F91 R:R:K296 62.55442.48YesNo077
21R:R:F91 R:R:L47 10.50397.31YesNo077
22R:R:F91 R:R:V87 48.20087.87YesNo076
23R:R:F52 R:R:V87 47.12525.24YesNo066
24R:R:F52 R:R:F88 43.85855.36YesNo064
25R:R:F88 R:R:L84 42.75612.44NoNo047
26R:R:L84 R:R:N55 41.64716.87NoNo079
27R:R:D83 R:R:N55 33.69638.08NoNo099
28R:R:D83 R:R:P303 31.36438.05NoNo099
29R:R:I307 R:R:P303 29.00561.69NoNo079
30R:R:F313 R:R:I307 26.626.28YesNo087
31R:R:F313 R:R:V61 16.59182.62YesYes487
32R:R:H65 R:R:V61 11.53255.54YesYes457
33L:L:?1 R:R:W265 69.8052.27YesYes108
34R:R:F261 R:R:W265 54.60036.01YesYes098
35R:R:F261 R:R:L128 37.82423.65YesNo098
36R:R:L128 R:R:Y306 36.88614.07NoYes089
37R:R:L131 R:R:Y306 27.99048.21YesYes099
38R:R:E134 R:R:L131 25.94653.98NoYes1189
39R:R:E134 R:R:L72 26.02022.65NoNo088
40R:R:F148 R:R:L72 24.62984.87YesNo078
41R:R:I189 R:R:Y191 25.40714.84NoYes046
42R:R:I189 R:R:Y178 23.64142.42NoYes043
43R:R:F115 R:R:Y178 21.79192.06YesYes063
44R:R:F115 R:R:L119 17.23513.65YesNo365
45R:R:I123 R:R:L119 17.02414.28YesNo375
46R:R:I75 R:R:N78 11.67662.83YesYes079
47L:L:?1 R:R:M207 37.294810.34YesYes105
48R:R:H211 R:R:M207 31.35097.88YesYes165
49R:R:H211 R:R:W126 24.14394.23YesYes165
50R:R:V129 R:R:W126 17.55689.81YesYes175
51R:R:I75 R:R:L131 14.66532.85YesYes079
52R:R:H211 R:R:L125 12.982.57YesYes167
53R:R:F261 R:R:L125 19.10472.44YesYes097
54R:R:L125 R:R:P215 14.04214.93YesYes179
55R:R:I133 R:R:V129 10.65473.07NoYes167
56R:R:I219 R:R:Y223 22.17722.42NoYes089
57R:R:I219 R:R:L216 24.15062.85NoYes187
58R:R:F212 R:R:L216 20.46512.44YesYes187
59R:R:F208 R:R:F212 10.383.22NoYes158
60L:L:?1 R:R:F208 12.74543.24YesNo105
61R:R:F212 R:R:W265 13.64672YesYes188
62R:R:F261 R:R:L216 14.57153.65YesYes097
63R:R:C222 R:R:Y136 10.20249.41NoYes087
64R:R:C222 R:R:I133 11.63641.64NoNo086
65R:R:V271 R:R:Y191 20.66273.79NoYes056
66R:R:I214 R:R:P215 16.48133.39NoYes059
67R:R:I214 R:R:V209 13.75061.54NoNo055
68R:R:I205 R:R:V209 11.01321.54NoNo055
69R:R:V254 R:R:Y223 17.8656.31NoYes089
70R:R:C264 R:R:W265 32.577211.75NoYes088
71R:R:C264 R:R:S298 31.40796.89NoNo089
72R:R:S298 R:R:Y301 30.23197.63NoNo095
73R:R:I263 R:R:Y301 23.03494.84NoNo055
74R:R:I259 R:R:I263 21.8122.94NoNo055
75R:R:I255 R:R:I259 20.58231.47NoNo055
76R:R:I255 R:R:T251 19.3461.52NoNo056
77R:R:E247 R:R:T251 18.10292.82YesNo076
78R:R:A234 R:R:Q244 13.06374.55NoNo054
79R:R:E247 R:R:Q244 14.33363.82YesNo074
80R:R:A234 R:R:T243 11.78721.68NoNo055
81R:R:S240 R:R:T243 10.50396.4NoNo045
82R:R:I275 R:R:V271 23.66821.54NoNo045
83R:R:F283 R:R:I275 18.97413.77YesNo644
84R:R:F203 R:R:S176 13.71712.64YesNo165
85R:R:F203 R:R:M207 16.81979.95YesYes165
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F91 R:R:K296 2.48 0 Yes No 7 7 2 1
L:L:?1 R:R:T118 4.9 1 Yes No 0 4 0 1
R:R:C167 R:R:M207 4.86 1 No Yes 5 5 2 1
R:R:C167 R:R:H211 5.9 1 No Yes 5 6 2 2
R:R:I189 R:R:Y191 4.84 0 No Yes 4 6 2 1
R:R:F203 R:R:I189 3.77 1 Yes No 6 4 2 2
R:R:Y191 R:R:Y192 18.86 0 Yes Yes 6 5 1 2
R:R:V271 R:R:Y191 3.79 0 No Yes 5 6 2 1
L:L:?1 R:R:Y191 5.46 1 Yes Yes 0 6 0 1
R:R:F203 R:R:Y206 2.06 1 Yes Yes 6 4 2 2
R:R:F203 R:R:M207 9.95 1 Yes Yes 6 5 2 1
R:R:M207 R:R:Y206 2.39 1 Yes Yes 5 4 1 2
R:R:H211 R:R:Y206 4.36 1 Yes Yes 6 4 2 2
R:R:H211 R:R:M207 7.88 1 Yes Yes 6 5 2 1
L:L:?1 R:R:M207 10.34 1 Yes Yes 0 5 0 1
R:R:F208 R:R:F212 3.22 1 No Yes 5 8 1 2
R:R:F208 R:R:I213 8.79 1 No No 5 4 1 2
L:L:?1 R:R:F208 3.24 1 Yes No 0 5 0 1
R:R:F212 R:R:I213 3.77 1 Yes No 8 4 2 2
R:R:F212 R:R:W265 2 1 Yes Yes 8 8 2 1
R:R:F261 R:R:W265 6.01 0 Yes Yes 9 8 2 1
R:R:C264 R:R:W265 11.75 0 No Yes 8 8 2 1
R:R:W265 R:R:Y268 2.89 1 Yes Yes 8 6 1 1
L:L:?1 R:R:W265 2.27 1 Yes Yes 0 8 0 1
R:R:P291 R:R:Y268 5.56 0 No Yes 6 6 2 1
R:R:A292 R:R:Y268 4 0 No Yes 5 6 2 1
R:R:A295 R:R:Y268 4 0 No Yes 8 6 2 1
L:L:?1 R:R:Y268 14.81 1 Yes Yes 0 6 0 1
R:R:P291 R:R:V271 3.53 0 No No 6 5 2 2
L:L:?1 R:R:K296 7.5 1 Yes No 0 7 0 1
L:L:?1 R:R:A272 1.05 1 Yes No 0 5 0 1
L:L:?1 R:R:V204 0.99 1 Yes No 0 4 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 6QNO_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 1.96
Number of Linked Nodes 316
Number of Links 386
Number of Hubs 62
Number of Links mediated by Hubs 227
Number of Communities 13
Number of Nodes involved in Communities 104
Number of Links involved in Communities 151
Path Summary
Number Of Nodes in MetaPath 86
Number Of Links MetaPath 85
Number of Shortest Paths 74911
Length Of Smallest Path 3
Average Path Length 14.2108
Length of Longest Path 35
Minimum Path Strength 1.02
Average Path Strength 5.45149
Maximum Path Strength 26.31
Minimum Path Correlation 0.7
Average Path Correlation 0.948851
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.33333
Average % Of Corr. Nodes 58.9549
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 51.487
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• D2 dopamine receptor binding   • protein binding   • binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • enzyme regulator activity   • adenylate cyclase inhibitor activity   • cyclase regulator activity   • molecular function inhibitor activity   • cyclase inhibitor activity   • molecular function regulator activity   • enzyme inhibitor activity   • adenylate cyclase regulator activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • response to hormone   • response to chemical   • response to endogenous stimulus   • response to peptide hormone   • response to oxygen-containing compound   • response to nitrogen compound   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • negative regulation of protein transport   • regulation of localization   • establishment of protein localization   • nitrogen compound transport   • negative regulation of biological process   • negative regulation of transport   • localization   • negative regulation of secretion   • negative regulation of hormone secretion   • negative regulation of secretion by cell   • intracellular protein localization   • regulation of biological quality   • regulation of peptide hormone secretion   • negative regulation of peptide hormone secretion   • regulation of hormone levels   • establishment of protein localization to extracellular region   • negative regulation of establishment of protein localization   • protein secretion   • establishment of localization   • regulation of protein secretion   • regulation of secretion   • negative regulation of protein secretion   • regulation of hormone secretion   • regulation of protein localization   • regulation of peptide secretion   • transport   • negative regulation of signaling   • hormone secretion   • negative regulation of cell communication   • protein localization to extracellular region   • negative regulation of peptide secretion   • peptide secretion   • regulation of secretion by cell   • secretion by cell   • amide transport   • signal release   • negative regulation of cellular process   • negative regulation of protein localization   • regulation of signaling   • regulation of transport   • secretion   • regulation of peptide transport   • regulation of establishment of protein localization   • export from cell   • cell-cell signaling   • regulation of protein transport   • peptide transport   • negative regulation of insulin secretion   • protein transport   • regulation of insulin secretion   • peptide hormone secretion   • macromolecule localization   • hormone transport   • regulation of cell communication   • insulin secretion   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • positive regulation of protein localization to cell periphery   • protein localization to cell periphery   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • regulation of protein localization to cell cortex   • positive regulation of protein localization   • protein localization to cell cortex   • response to ketone   • response to prostaglandin   • response to lipid   • response to alcohol   • response to prostaglandin E   • cellular response to forskolin   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to alcohol   • response to forskolin   • cellular response to lipid   • cellular response to ketone   • midbody   • cellular anatomical structure   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle
Gene OntologyCellular Component• midbody   • cellular anatomical structure   • membrane-bounded organelle   • intracellular anatomical structure   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • intracellular membrane-bounded organelle   • nucleolus   • intracellular organelle lumen   • intracellular organelle   • organelle lumen   • organelle   • membraneless organelle   • nuclear lumen   • cell periphery   • cell cortex   • cytoplasm   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • extracellular vesicle   • extracellular organelle   • extracellular region   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • cytosol   • nucleoplasm   • vacuolar membrane   • lytic vacuole   • vacuole   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • organelle membrane   • lysosome   • Golgi apparatus   • endomembrane system   • cilium   • plasma membrane bounded cell projection   • ciliary basal body   • cell projection   • protein-containing complex binding   • binding   • protein binding   • enzyme binding   • GTPase binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cell communication   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • non-motile cilium   • 9+0 non-motile cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • synapse   • cell junction   • G-protein beta-subunit binding   • localization   • macromolecule localization   • intracellular protein localization   • cellular developmental process   • photoreceptor cell differentiation   • cell development   • eye morphogenesis   • neurogenesis   • neuron differentiation   • cell differentiation   • eye photoreceptor cell differentiation   • animal organ morphogenesis   • photoreceptor cell development   • eye photoreceptor cell development   • nervous system development   • generation of neurons   • anatomical structure morphogenesis   • sensory organ morphogenesis   • neuron development   • phototransduction   • detection of light stimulus   • response to light stimulus   • detection of external stimulus   • response to external stimulus   • detection of abiotic stimulus   • detection of stimulus   • response to abiotic stimulus   • response to radiation   • opsin binding   • arrestin family protein binding   • G protein-coupled photoreceptor activity   • molecular transducer activity   • photoreceptor activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • vitamin binding   • retinal binding   • isoprenoid binding   • retinoid binding   • lipid binding   • 11-cis retinal binding   • small molecule binding   • G-protein alpha-subunit binding   • GTPase regulator activity   • enzyme regulator activity   • guanyl-nucleotide exchange factor activity   • nucleoside-triphosphatase regulator activity   • molecular function regulator activity   • cation binding   • transition metal ion binding   • zinc ion binding   • ion binding   • metal ion binding   • identical protein binding   • rod bipolar cell differentiation   • neural retina development   • camera-type eye morphogenesis   • retinal bipolar neuron differentiation   • glutamatergic neuron differentiation   • retina morphogenesis in camera-type eye   • cellular response to light stimulus   • cellular response to radiation   • cellular response to abiotic stimulus   • cellular response to environmental stimulus   • detection of visible light   • G protein-coupled opsin signaling pathway   • phototransduction, visible light   • response to light intensity   • podosome assembly   • organelle assembly   • protein-containing complex organization   • membraneless organelle assembly   • cellular component organization   • cellular component biogenesis   • organelle organization   • cellular component assembly   • protein-containing complex assembly   • cellular component organization or biogenesis   • biosynthetic process   • metabolic process   • macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • multicellular organismal-level homeostasis   • homeostatic process   • anatomical structure homeostasis   • tissue homeostasis   • retina homeostasis   • photoreceptor cell maintenance   • absorption of visible light   • light absorption   • microtubule cytoskeleton organization   • microtubule-based process   • cytoskeleton organization   • sensory perception of light stimulus   • visual perception   • thermoception   • sensory perception of temperature stimulus   • detection of temperature stimulus involved in sensory perception   • response to temperature stimulus   • detection of temperature stimulus involved in thermoception   • detection of temperature stimulus   • detection of stimulus involved in sensory perception   • taxis   • thermotaxis   • locomotion   • cell-cell junction   • anchoring junction   • plasma membrane signaling receptor complex   • G protein-coupled receptor complex   • receptor complex   • sperm midpiece   • 9+2 motile cilium   • sperm flagellum   • motile cilium   • photoreceptor inner segment membrane   • plasma membrane region   • photoreceptor inner segment   • ciliary membrane   • photoreceptor outer segment membrane   • cell projection membrane   • Golgi membrane   • outer membrane   • sperm head   • sperm head plasma membrane   • sperm plasma membrane   • rod photoreceptor outer segment
SCOP2Domain Identifier• Ras-like P-loop GTPases   • WD40 repeat-like   • G protein-coupled receptor-like
SCOP2Family Identifier• Ras-like P-loop GTPases   • WD40 repeat-like   • G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeRET
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeRET
NameRETINAL
Synonyms
Identifier
FormulaC20 H28 O
Molecular Weight284.436
SMILES
PubChem638015
Formal Charge0
Total Atoms49
Total Chiral Atoms0
Total Bonds49
Total Aromatic Bonds0

CodeNAG
PDB ResiduesH:H:?1 H:H:?2
Environment DetailsOpen EMBL-EBI Page
CodeNAG
NameN-Acetylglucosamine
SynonymsN-Acetylglucosamine
Identifier
FormulaC8 H15 N O6
Molecular Weight221.208
SMILES
PubChem24139
Formal Charge0
Total Atoms30
Total Chiral Atoms5
Total Bonds30
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP02699
Sequence
>6QNO_nogp_Chain_R
CGTEGPNFY VPFSNKTGV VRSPFEAPQ YYLAEPWQF SMLAAYMFL 
LIMLGFPIN FLTLYVTVQ HKKLRTPLN YILLNLAVA DLFMVFGGF 
TTTLYTSLH GYFVFGPTG CNLEGFFAT LGGEIALWS LVVLAIERY 
VVVCKPMSN FRFGENHAI MGVAFTWVM ALACAAPPL VGWSRYIPE 
GMQCSCGID YYTPHEETN NESFVIYMF VVHFIIPLI VIFFCYGQL 
VFTVKEAAA QQQESATTQ KAEKEVTRM VIIYVIAFL ICWLPYAGV 
AFYIFTHQG SCFGPIFMT IPAFFAKTS AVYNPVIYI MMNKQFRNC 
MVTTLCCGK NPLGDDEAS T


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8P13ASensoryOpsinRhodopsinBos taurus--Gi1/β1/γT15.22024-11-20To be published
8P13 (No Gprot) ASensoryOpsinRhodopsinBos taurus--5.22024-11-20To be published
8P15ASensoryOpsinRhodopsinBos taurus--Gi1/β1/γT15.92024-11-20To be published
8P15 (No Gprot) ASensoryOpsinRhodopsinBos taurus--5.92024-11-20To be published
6FKDASensoryOpsinsRhodopsinBos taurus-PubChem 137349183-2.492018-04-04doi.org/10.1073/pnas.1718084115
6FKCASensoryOpsinsRhodopsinBos taurus-PubChem 132473039-2.462018-04-04doi.org/10.1073/pnas.1718084115
6FKBASensoryOpsinsRhodopsinBos taurus-PubChem 132473038-3.032018-04-04doi.org/10.1073/pnas.1718084115
6FKAASensoryOpsinsRhodopsinBos taurus-PubChem 132473037-2.72018-04-04doi.org/10.1073/pnas.1718084115
6FK9ASensoryOpsinsRhodopsinBos taurus-PubChem 132473036-2.632018-04-04doi.org/10.1073/pnas.1718084115
6FK8ASensoryOpsinsRhodopsinBos taurus-PubChem 132473035-2.872018-04-04doi.org/10.1073/pnas.1718084115
6FK7ASensoryOpsinsRhodopsinBos taurus-PubChem 132473034-2.622018-04-04doi.org/10.1073/pnas.1718084115
6FK6ASensoryOpsinsRhodopsinBos taurus-PubChem 132473033-2.362018-04-04doi.org/10.1073/pnas.1718084115
6PH7ASensoryOpsinsRhodopsinBos taurus-NerolGt(CT)2.92020-07-01To be published
6PH7 (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Nerol2.92020-07-01To be published
6PGSASensoryOpsinsRhodopsinBos taurus-GeraniolGt(CT)2.92020-07-01To be published
6PGS (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Geraniol2.92020-07-01To be published
6PELASensoryOpsinsRhodopsinBos taurus-CitronellolGt(CT)3.192020-06-24To be published
6PEL (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Citronellol3.192020-06-24To be published
2G87ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.62006-09-02doi.org/10.1002/anie.200600595
4J4QASensoryOpsinsRhodopsinBos taurusOctyl β-D-Glucopyranoside-Gt(CT)2.652013-10-30doi.org/10.1002/anie.201302374
4J4Q (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl β-D-Glucopyranoside-2.652013-10-30doi.org/10.1002/anie.201302374
3OAXASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.62011-01-19doi.org/10.1016/j.bpj.2010.08.003
5W0PASensoryOpsinsRhodopsinHomo sapiens--Arrestin13.012017-08-09doi.org/10.1016/j.cell.2017.07.002
1U19ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.22004-10-12doi.org/10.1016/j.jmb.2004.07.044
1GZMASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.652003-11-20doi.org/10.1016/j.jmb.2004.08.090
2J4YASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.42007-09-25doi.org/10.1016/j.jmb.2007.03.007
3AYMASensoryOpsinsRhodopsinTodarodes pacificusAll-trans-Retinal--2.82011-08-17doi.org/10.1016/j.jmb.2011.08.044
3AYNASensoryOpsinsRhodopsinTodarodes pacificus9-cis-Retinal--2.72011-08-17doi.org/10.1016/j.jmb.2011.08.044
6OY9ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt/β1/γ13.92019-07-24doi.org/10.1016/j.molcel.2019.06.007
6OY9 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.92019-07-24doi.org/10.1016/j.molcel.2019.06.007
6OYAASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt/β1/γ13.32019-07-24doi.org/10.1016/j.molcel.2019.06.007
6OYA (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.32019-07-24doi.org/10.1016/j.molcel.2019.06.007
4X1HASensoryOpsinsRhodopsinBos taurusNonyl-β-D-Glucopyranoside-Gt(CT)2.292015-11-04doi.org/10.1016/j.str.2015.09.015
4X1H (No Gprot) ASensoryOpsinsRhodopsinBos taurusNonyl-β-D-Glucopyranoside-2.292015-11-04doi.org/10.1016/j.str.2015.09.015
1HZXASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.82001-07-04doi.org/10.1021/bi0155091
4BEZASensoryOpsinsRhodopsinBos taurus---3.32013-04-24doi.org/10.1038/embor.2013.44
4BEYASensoryOpsinsRhodopsinBos taurus--Gt(CT)2.92013-05-08doi.org/10.1038/embor.2013.44
4BEY (No Gprot) ASensoryOpsinsRhodopsinBos taurus--2.92013-05-08doi.org/10.1038/embor.2013.44
2Z73ASensoryOpsinsRhodopsinTodarodes pacificus11-cis-Retinal--2.52008-05-13doi.org/10.1038/nature06925
3CAPASensoryOpsinsRhodopsinBos taurus---2.92008-06-24doi.org/10.1038/nature07063
3DQBASensoryOpsinsRhodopsinBos taurus--Gt(CT)3.22008-09-23doi.org/10.1038/nature07330
3DQB (No Gprot) ASensoryOpsinsRhodopsinBos taurus--3.22008-09-23doi.org/10.1038/nature07330
3PQRASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)2.852011-03-09doi.org/10.1038/nature09789
3PQR (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-2.852011-03-09doi.org/10.1038/nature09789
3PXOASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--32011-03-09doi.org/10.1038/nature09789
2X72ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)32011-03-16doi.org/10.1038/nature09795
2X72 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-32011-03-16doi.org/10.1038/nature09795
4ZWJASensoryOpsinsRhodopsinHomo sapiens--Arrestin13.32015-07-29doi.org/10.1038/nature14656
4PXFASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Arrestin1 Finger Loop2.752014-09-17doi.org/10.1038/ncomms5801
5WKTASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Gt(CT)3.22017-12-13doi.org/10.1038/nprot.2017.135
5WKT (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-3.22017-12-13doi.org/10.1038/nprot.2017.135
8FCZASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.72023-08-30doi.org/10.1038/s41467-023-40911-9
8FD0ASensoryOpsinsRhodopsinBos taurus---3.712023-08-30doi.org/10.1038/s41467-023-40911-9
8FD1ASensoryOpsinsRhodopsinBos taurus---4.252023-08-30doi.org/10.1038/s41467-023-40911-9
9EPPASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-chim(Gi1-CtGq)/β1/γ24.062024-10-23doi.org/10.1038/s41467-024-53208-2
9EPP (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-4.062024-10-23doi.org/10.1038/s41467-024-53208-2
9EPQASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-chim(Gi1-CtGq)/β1/γ24.152024-10-23doi.org/10.1038/s41467-024-53208-2
9EPQ (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-4.152024-10-23doi.org/10.1038/s41467-024-53208-2
6CMOASensoryOpsinsRhodopsinHomo sapiens--Gi1/β1/γ24.52018-06-20doi.org/10.1038/s41586-018-0215-y
6CMO (No Gprot) ASensoryOpsinsRhodopsinHomo sapiens--4.52018-06-20doi.org/10.1038/s41586-018-0215-y
7MT8ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK15.82021-07-07doi.org/10.1038/s41586-021-03721-x
7MT9ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK172021-07-07doi.org/10.1038/s41586-021-03721-x
7MTAASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK14.12021-07-07doi.org/10.1038/s41586-021-03721-x
7MTBASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK142021-07-07doi.org/10.1038/s41586-021-03721-x
7ZBCASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
7ZBEASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
8A6CASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
8A6DASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
8A6EASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
5DGYASensoryOpsinsRhodopsinHomo sapiens--Arrestin17.72016-03-23doi.org/10.1038/sdata.2016.21
2HPYASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.82006-08-22doi.org/10.1073/pnas.0601765103
2I35ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.82006-10-17doi.org/10.1073/pnas.0608022103
2I36ASensoryOpsinsRhodopsinBos taurus---4.12006-10-17doi.org/10.1073/pnas.0608022103
2I37ASensoryOpsinsRhodopsinBos taurus---4.152006-10-17doi.org/10.1073/pnas.0608022103
1L9HASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.62002-05-15doi.org/10.1073/pnas.082666399
4A4MASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)3.32012-01-25doi.org/10.1073/pnas.1114089108
4A4M (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.32012-01-25doi.org/10.1073/pnas.1114089108
5TE3ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside--2.72017-03-15doi.org/10.1073/pnas.1617446114
5TE5ASensoryOpsinsRhodopsinBos taurus20-Methanoretinal--4.012017-03-15doi.org/10.1073/pnas.1617446114
6I9KASensoryOpsinsRhodopsinHasarius adansoni9-cis-Retinal--2.152019-07-03doi.org/10.1073/pnas.1902192116
2ZIYASensoryOpsinsRhodopsinTodarodes pacificus11-cis-Retinal--3.72008-05-06doi.org/10.1074/jbc.C800040200
6OFJASensoryOpsinsRhodopsinBos taurus---4.52019-08-21doi.org/10.1074/jbc.RA119.010089
3C9LASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.652008-08-05doi.org/10.1107/S0907444908017162
3C9MASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.42008-08-05doi.org/10.1107/S0907444908017162
6FUFASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Go3.122018-10-03doi.org/10.1126/sciadv.aat7052
6FUF (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.122018-10-03doi.org/10.1126/sciadv.aat7052
1F88ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.82000-08-04doi.org/10.1126/science.289.5480.739
4WW3ASensoryOpsinsRhodopsinTodarodes pacificusAll-trans-Retinal--2.82015-06-17doi.org/10.1371/journal.pone.0126970
5DYSASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.32016-08-10doi.org/10.15252/embr.201642671
5EN0ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)2.812016-08-10doi.org/10.15252/embr.201642671
5EN0 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-2.812016-08-10doi.org/10.15252/embr.201642671
2PEDASensoryOpsinsRhodopsinBos taurus9-cis-Retinal--2.952007-10-30doi.org/10.1529/biophysj.107.108225
6QNOASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gi1/β1/γ14.382019-07-10doi.org/10.7554/eLife.46041
6QNO (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-4.382019-07-10doi.org/10.7554/eLife.46041
9EPRASensoryOpsinsRhodopsinHasarius adansoniRetinal-Gi1/β1/γ24.92024-10-30doi.org/10.1038/s41467-024-53208-2
9EPR (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoniRetinal-4.92024-10-30doi.org/10.1038/s41467-024-53208-2
6NWEASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Gt(CT)2.712020-02-12To be published
6NWE (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-2.712020-02-12To be published
8P12ASensoryOpsinsRhodopsinBos taurus--Gi1/β1/γT13.212024-11-20To be published
8P12 (No Gprot) ASensoryOpsinsRhodopsinBos taurus--3.212024-11-20To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 6QNO_nogp.zip



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