Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:N15 12.2125447
2R:R:V20 8.53546
3R:R:P23 9.08425
4R:R:F24 7.448525
5R:R:Q28 6.6525425
6R:R:Y29 9.1525454
7R:R:Y30 8.76404
8R:R:Q36 7.8675462
9R:R:F37 6.4625455
10R:R:N55 6.112579
11R:R:H65 6.696585
12R:R:L68 6.964587
13R:R:I75 5.215437
14R:R:N78 5.36667639
15R:R:D83 7.49479
16R:R:F91 6.958507
17R:R:F103 5.374528
18R:R:F105 5.4925407
19R:R:C110 5.2075429
20R:R:I123 4.52407
21R:R:W126 10.885405
22R:R:Y136 6.734597
23R:R:F148 6.29507
24R:R:P170 4.51417
25R:R:W175 8.436515
26R:R:R177 13.8275415
27R:R:P180 6.44523
28R:R:Q184 6.34423
29R:R:C187 6.4675429
30R:R:D190 10.416514
31R:R:Y191 6.53616
32R:R:Y192 7.198515
33R:R:T193 6.625415
34R:R:H195 15.67414
35R:R:T198 5.605411
36R:R:N200 5.875414
37R:R:F203 8.87616
38R:R:Y206 6.7725414
39R:R:M207 5.565415
40R:R:H211 8.91833616
41R:R:F212 5.4025418
42R:R:Y223 9.5025409
43R:R:E247 4.8425407
44R:R:F261 5.0175419
45R:R:Y268 11.928516
46R:R:F283 8.1875404
47R:R:P285 5.445403
48R:R:F313 9.755408
49L:L:?405 8.326361110
50H:H:?1 14.97540
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:P180 R:R:Q184 31.23916.32YesYes233
2R:R:C187 R:R:P180 60.32675.65YesYes293
3R:R:C187 R:R:E113 63.35314.56YesNo295
4R:R:E113 R:R:S186 94.71914.31NoNo055
5R:R:S186 R:R:T94 95.33346.4NoNo057
6R:R:M44 R:R:T94 99.44076.02NoNo077
7R:R:F91 R:R:M44 1003.73YesNo077
8R:R:F91 R:R:K296 81.33698.69YesNo077
9L:L:?405 R:R:K296 80.87716.01YesNo007
10L:L:?405 R:R:Y191 36.327810YesYes106
11R:R:Y191 R:R:Y192 23.429310.92YesYes165
12R:R:Q28 R:R:Y30 42.497310.15YesYes054
13R:R:V20 R:R:Y30 28.559212.62YesYes064
14H:H:?1 R:R:V20 16.68335.35YesYes406
15R:R:P23 R:R:Q28 23.61124.74YesYes255
16H:H:?1 H:H:?2 11.968633.43YesNo000
17R:R:C110 R:R:F103 12.04064.19YesYes298
18R:R:F103 R:R:F105 28.74794.29YesYes087
19R:R:F105 R:R:V104 23.4437.87YesNo074
20R:R:V104 R:R:Y102 20.842111.36NoNo044
21R:R:P27 R:R:Y102 19.50046.95NoNo084
22R:R:P27 R:R:Y29 18.151911.13NoYes084
23R:R:F37 R:R:Y29 14.03087.22YesYes554
24R:R:F91 R:R:L47 74.45713.4YesNo077
25R:R:L47 R:R:T297 66.30414.42NoNo176
26R:R:F91 R:R:V87 12.6245.24YesNo076
27R:R:I48 R:R:V87 11.39213.07NoNo066
28R:R:F91 R:R:M86 53.34043.73YesNo077
29R:R:A299 R:R:M86 49.38754.83NoNo097
30R:R:A299 R:R:D83 48.38214.63NoYes099
31R:R:D83 R:R:N55 41.711613.46YesYes799
32R:R:A80 R:R:N55 35.78223.13NoYes099
33R:R:A80 R:R:T58 34.68763.36NoNo099
34R:R:I307 R:R:T58 33.586112.16NoNo079
35R:R:F313 R:R:I307 31.36266.28YesNo087
36R:R:F313 R:R:L68 25.683714.61YesYes087
37R:R:H65 R:R:L68 16.18913.86YesYes857
38R:R:T297 R:R:Y301 68.23254.99NoNo165
39R:R:S298 R:R:Y301 61.9126.36NoNo195
40R:R:N302 R:R:S298 76.31685.96NoNo099
41R:R:L128 R:R:N302 75.61684.12NoNo089
42R:R:L128 R:R:Y306 74.909916.41NoNo089
43R:R:M257 R:R:Y306 69.028611.97NoNo089
44R:R:M257 R:R:Y223 68.253113.17NoYes089
45R:R:R135 R:R:Y223 42.03079.26NoYes099
46R:R:L131 R:R:R135 41.076817.01NoNo099
47R:R:I75 R:R:L131 40.09544.28YesNo079
48R:R:I75 R:R:V130 18.88966.14YesNo077
49R:R:E134 R:R:V130 16.61815.7NoNo087
50R:R:E134 R:R:F148 15.47212.83NoYes087
51R:R:I75 R:R:N78 19.94654.25YesYes379
52R:R:I123 R:R:N78 15.47544.25YesYes079
53R:R:I123 R:R:L119 12.00635.71YesNo075
54L:L:?405 R:R:M207 29.30727.24YesYes105
55R:R:H211 R:R:M207 20.47493.94YesYes165
56R:R:E122 R:R:H211 13.427.39NoYes166
57R:R:C264 R:R:W265 20.498910.45NoNo188
58R:R:L125 R:R:W265 14.84414.81NoNo178
59R:R:E122 R:R:L125 18.88963.98NoNo167
60R:R:H211 R:R:W126 10.77459.52YesYes065
61R:R:A132 R:R:Y223 13.20738.01NoYes099
62R:R:C222 R:R:Y136 10.86716.72NoYes087
63R:R:A132 R:R:C222 12.04061.81NoNo098
64R:R:V254 R:R:Y223 21.15777.57NoYes089
65R:R:V227 R:R:V254 20.03574.81NoNo058
66R:R:K231 R:R:V227 18.91026.07NoNo055
67R:R:E247 R:R:K231 16.638610.8YesNo075
68L:L:?405 R:R:I189 10.21174.87YesNo004
69R:R:F203 R:R:M207 16.73826.22YesYes165
70R:R:F203 R:R:S176 13.529810.57YesNo065
71R:R:N200 R:R:S176 11.50884.47YesNo045
72R:R:M288 R:R:Y191 10.43135.99NoYes146
73R:R:F287 R:R:M288 10.0713.73NoNo044
74R:R:P180 R:R:P23 27.68077.79YesYes235
75R:R:Q184 R:R:Q28 23.23036.4YesYes235
76R:R:E113 R:R:F103 30.74157NoYes258
77R:R:C110 R:R:F24 12.34945.59YesYes295
78R:R:C264 R:R:S298 15.09455.16NoNo189
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F91 R:R:K296 8.69 0 Yes No 7 7 2 1
R:R:T118 R:R:Y178 9.99 0 No No 4 3 1 2
L:L:?405 R:R:T118 10.06 1 Yes No 0 4 0 1
R:R:C167 R:R:M207 4.86 1 No Yes 5 5 2 1
R:R:C167 R:R:H211 11.79 1 No Yes 5 6 2 2
R:R:E181 R:R:Y268 4.49 0 No Yes 4 6 2 1
L:L:?405 R:R:G188 5.84 1 Yes No 0 5 0 1
R:R:F203 R:R:I189 6.28 1 Yes No 6 4 2 1
L:L:?405 R:R:I189 4.87 1 Yes No 0 4 0 1
R:R:Y191 R:R:Y192 10.92 1 Yes Yes 6 5 1 2
R:R:Y191 R:R:Y268 5.96 1 Yes Yes 6 6 1 1
R:R:V271 R:R:Y191 3.79 0 No Yes 5 6 2 1
R:R:M288 R:R:Y191 5.99 1 No Yes 4 6 2 1
L:L:?405 R:R:Y191 10 1 Yes Yes 0 6 0 1
R:R:M288 R:R:Y192 8.38 1 No Yes 4 5 2 2
R:R:F203 R:R:M207 6.22 1 Yes Yes 6 5 2 1
R:R:H211 R:R:M207 3.94 1 Yes Yes 6 5 2 1
L:L:?405 R:R:M207 7.24 1 Yes Yes 0 5 0 1
R:R:F208 R:R:F212 5.36 1 No Yes 5 8 2 1
R:R:F208 R:R:I213 6.28 1 No No 5 4 2 2
R:R:F212 R:R:I213 3.77 1 Yes No 8 4 1 2
R:R:A269 R:R:F212 8.32 0 No Yes 7 8 2 1
L:L:?405 R:R:F212 4.16 1 Yes Yes 0 8 0 1
R:R:P291 R:R:Y268 12.52 0 No Yes 6 6 2 1
L:L:?405 R:R:Y268 34 1 Yes Yes 0 6 0 1
L:L:?405 R:R:A272 4.03 1 Yes No 0 5 0 1
L:L:?405 R:R:K296 6.01 1 Yes No 0 7 0 1
R:R:A168 R:R:T118 3.36 0 No No 7 4 2 1
L:L:?405 R:R:A117 2.69 1 Yes No 0 5 0 1
L:L:?405 R:R:A295 2.69 1 Yes No 0 8 0 1
R:R:A292 R:R:Y268 2.67 0 No Yes 5 6 2 1
R:R:V204 R:R:Y191 2.52 0 No Yes 4 6 2 1
R:R:A117 R:R:G90 1.95 0 No No 5 6 1 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 4J4Q_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.73
Number of Linked Nodes 318
Number of Links 361
Number of Hubs 50
Number of Links mediated by Hubs 182
Number of Communities 10
Number of Nodes involved in Communities 74
Number of Links involved in Communities 102
Path Summary
Number Of Nodes in MetaPath 79
Number Of Links MetaPath 78
Number of Shortest Paths 67585
Length Of Smallest Path 3
Average Path Length 16.102
Length of Longest Path 37
Minimum Path Strength 1.47
Average Path Strength 7.1725
Maximum Path Strength 31
Minimum Path Correlation 0.71
Average Path Correlation 0.954049
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.33333
Average % Of Corr. Nodes 59.8736
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 38.6327
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• guanyl nucleotide binding   • binding   • nucleotide binding   • GDP binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • protein binding   • kinase binding   • enzyme binding   • protein kinase binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • signaling receptor binding   • G protein-coupled receptor binding   • acyl binding   • GTP binding   • purine ribonucleoside triphosphate binding   • cation binding   • metal ion binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • detection of light stimulus involved in visual perception   • detection of light stimulus   • response to light stimulus   • multicellular organismal process   • detection of external stimulus   • sensory perception of light stimulus   • system process   • nervous system process   • response to stimulus   • response to external stimulus   • detection of abiotic stimulus   • detection of stimulus   • sensory perception   • detection of light stimulus involved in sensory perception
Gene OntologyBiological Process• detection of light stimulus involved in visual perception   • detection of light stimulus   • response to light stimulus   • multicellular organismal process   • detection of external stimulus   • sensory perception of light stimulus   • system process   • nervous system process   • response to stimulus   • response to external stimulus   • detection of abiotic stimulus   • detection of stimulus   • sensory perception   • detection of light stimulus involved in sensory perception   • response to abiotic stimulus   • response to radiation   • visual perception   • detection of stimulus involved in sensory perception   • phototransduction   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • signaling   • biological regulation   • detection of visible light   • cell communication   • cellular process   • signal transduction   • phototransduction, visible light   • negative regulation of hydrolase activity   • regulation of molecular function   • regulation of catalytic activity   • regulation of hydrolase activity   • negative regulation of cyclic-nucleotide phosphodiesterase activity   • negative regulation of molecular function   • negative regulation of catalytic activity   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • membrane-bounded organelle   • non-motile cilium   • membrane   • plasma membrane   • cilium   • 9+0 non-motile cilium   • neuron projection   • ciliary membrane   • photoreceptor outer segment membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell periphery   • cell projection   • bounding membrane of organelle
Gene OntologyCellular Component• membrane-bounded organelle   • non-motile cilium   • membrane   • plasma membrane   • cilium   • 9+0 non-motile cilium   • neuron projection   • ciliary membrane   • photoreceptor outer segment membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell periphery   • cell projection   • bounding membrane of organelle   • cellular anatomical structure   • photoreceptor cell cilium   • organelle   • plasma membrane region   • organelle membrane   • cell projection membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • photoreceptor inner segment   • photoreceptor disc membrane   • plasma membrane signaling receptor complex   • G protein-coupled receptor complex   • receptor complex   • intracellular anatomical structure   • cytoplasm   • opsin binding   • protein binding   • binding   • arrestin family protein binding   • G protein-coupled photoreceptor activity   • molecular transducer activity   • photoreceptor activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • vitamin binding   • retinal binding   • isoprenoid binding   • retinoid binding   • lipid binding   • 11-cis retinal binding   • small molecule binding   • G-protein alpha-subunit binding   • GTPase regulator activity   • enzyme regulator activity   • guanyl-nucleotide exchange factor activity   • nucleoside-triphosphatase regulator activity   • molecular function regulator activity   • cation binding   • transition metal ion binding   • zinc ion binding   • ion binding   • metal ion binding   • identical protein binding   • multicellular organismal process   • rod bipolar cell differentiation   • cellular developmental process   • sensory organ development   • retina development in camera-type eye   • visual system development   • neural retina development   • neurogenesis   • multicellular organism development   • eye morphogenesis   • neuron differentiation   • cell differentiation   • anatomical structure development   • animal organ morphogenesis   • sensory system development   • system development   • developmental process   • camera-type eye morphogenesis   • eye development   • animal organ development   • nervous system development   • retinal bipolar neuron differentiation   • glutamatergic neuron differentiation   • generation of neurons   • retina morphogenesis in camera-type eye   • anatomical structure morphogenesis   • sensory organ morphogenesis   • camera-type eye development   • cellular process   • cellular response to stimulus   • response to light stimulus   • response to stimulus   • cellular response to light stimulus   • response to radiation   • response to abiotic stimulus   • cellular response to radiation   • cellular response to abiotic stimulus   • cellular response to environmental stimulus   • regulation of cellular process   • signaling   • detection of abiotic stimulus   • cell communication   • signal transduction   • detection of light stimulus   • phototransduction   • detection of external stimulus   • regulation of biological process   • biological regulation   • detection of visible light   • response to external stimulus   • detection of stimulus   • G protein-coupled receptor signaling pathway   • G protein-coupled opsin signaling pathway   • phototransduction, visible light   • response to light intensity   • podosome assembly   • organelle assembly   • protein-containing complex organization   • membraneless organelle assembly   • cellular component organization   • cellular component biogenesis   • organelle organization   • cellular component assembly   • protein-containing complex assembly   • cellular component organization or biogenesis   • biosynthetic process   • metabolic process   • macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • multicellular organismal-level homeostasis   • homeostatic process   • anatomical structure homeostasis   • tissue homeostasis   • retina homeostasis   • photoreceptor cell maintenance   • absorption of visible light   • light absorption   • microtubule cytoskeleton organization   • microtubule-based process   • cytoskeleton organization   • sensory perception of light stimulus   • system process   • sensory perception   • nervous system process   • visual perception   • thermoception   • sensory perception of temperature stimulus   • detection of temperature stimulus involved in sensory perception   • response to temperature stimulus   • detection of temperature stimulus involved in thermoception   • detection of temperature stimulus   • detection of stimulus involved in sensory perception   • taxis   • thermotaxis   • locomotion   • cell-cell junction   • anchoring junction   • cell junction   • sperm midpiece   • 9+2 motile cilium   • sperm flagellum   • motile cilium   • photoreceptor inner segment membrane   • Golgi membrane   • Golgi apparatus   • intracellular membrane-bounded organelle   • endomembrane system   • intracellular organelle   • outer membrane   • sperm head   • sperm head plasma membrane   • sperm plasma membrane   • rod photoreceptor outer segment
SCOP2Domain Identifier• G protein-coupled receptor-like
SCOP2Family Identifier• G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeBOG
PDB ResiduesL:L:?405
Environment DetailsOpen EMBL-EBI Page
CodeBOG
Nameoctyl beta-D-glucopyranoside
SynonymsBeta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside
Identifier
FormulaC14 H28 O6
Molecular Weight292.369
SMILES
PubChem62852
Formal Charge0
Total Atoms48
Total Chiral Atoms5
Total Bonds48
Total Aromatic Bonds0

CodeNAG
PDB ResiduesH:H:?1 H:H:?2
Environment DetailsOpen EMBL-EBI Page
CodeNAG
NameN-Acetylglucosamine
SynonymsN-Acetylglucosamine
Identifier
FormulaC8 H15 N O6
Molecular Weight221.208
SMILES
PubChem24139
Formal Charge0
Total Atoms30
Total Chiral Atoms5
Total Bonds30
Total Aromatic Bonds0

CodeBMA
PDB ResiduesH:H:?3
Environment DetailsOpen EMBL-EBI Page
CodeBMA
Namebeta-D-mannopyranose
Synonymsbeta-D-mannose; D-mannose; mannose
Identifier
FormulaC6 H12 O6
Molecular Weight180.156
SMILES
PubChem439680
Formal Charge0
Total Atoms24
Total Chiral Atoms5
Total Bonds24
Total Aromatic Bonds0

CodePLM
PDB ResiduesH:H:?4
Environment DetailsOpen EMBL-EBI Page
CodePLM
NamePalmitic Acid
SynonymsPalmitinsäure
Identifier
FormulaC16 H32 O2
Molecular Weight256.424
SMILES
PubChem985
Formal Charge0
Total Atoms50
Total Chiral Atoms0
Total Bonds49
Total Aromatic Bonds0

CodeMAN
PDB ResiduesH:H:?5
Environment DetailsOpen EMBL-EBI Page
CodeMAN
Namealpha-D-mannopyranose
Synonymsalpha-D-mannose; D-mannose; mannose
Identifier
FormulaC6 H12 O6
Molecular Weight180.156
SMILES
PubChem185698
Formal Charge0
Total Atoms24
Total Chiral Atoms5
Total Bonds24
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP02699
Sequence
>4J4Q_nogp_Chain_R
MNGTEGPNF YVPFSNKTG VVRSPFEAP QYYLAEPWQ FSMLAAYMF 
LLIMLGFPI NFLTLYVTV QHKKLRTPL NYILLNLAV ADLFMVFGG 
FTTTLYTSL HGYFVFGPT GCNLEGFFA TLGGEIALW SLVVLAIER 
YVVVCKPMS NFRFGENHA IMGVAFTWV MALACAAPP LVGWSRYIP 
EGMQCSCGI DYYTPHEET NNESFVIYM FVVHFIIPL IVIFFCYGQ 
LVFTVKEAA AQQQESATT QKAEKEVTR MVIIMVIAF LICWLPYAG 
VAFYIFTHQ GSDFGPIFM TIPAFFAKT SAVYNPVIY IMMNKQFRN 
CMVTTLCCG KN


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8P13ASensoryOpsinRhodopsinBos taurus--Gi1/β1/γT15.22024-11-20To be published
8P13 (No Gprot) ASensoryOpsinRhodopsinBos taurus--5.22024-11-20To be published
8P15ASensoryOpsinRhodopsinBos taurus--Gi1/β1/γT15.92024-11-20To be published
8P15 (No Gprot) ASensoryOpsinRhodopsinBos taurus--5.92024-11-20To be published
6FKDASensoryOpsinsRhodopsinBos taurus-PubChem 137349183-2.492018-04-04doi.org/10.1073/pnas.1718084115
6FKCASensoryOpsinsRhodopsinBos taurus-PubChem 132473039-2.462018-04-04doi.org/10.1073/pnas.1718084115
6FKBASensoryOpsinsRhodopsinBos taurus-PubChem 132473038-3.032018-04-04doi.org/10.1073/pnas.1718084115
6FKAASensoryOpsinsRhodopsinBos taurus-PubChem 132473037-2.72018-04-04doi.org/10.1073/pnas.1718084115
6FK9ASensoryOpsinsRhodopsinBos taurus-PubChem 132473036-2.632018-04-04doi.org/10.1073/pnas.1718084115
6FK8ASensoryOpsinsRhodopsinBos taurus-PubChem 132473035-2.872018-04-04doi.org/10.1073/pnas.1718084115
6FK7ASensoryOpsinsRhodopsinBos taurus-PubChem 132473034-2.622018-04-04doi.org/10.1073/pnas.1718084115
6FK6ASensoryOpsinsRhodopsinBos taurus-PubChem 132473033-2.362018-04-04doi.org/10.1073/pnas.1718084115
6PH7ASensoryOpsinsRhodopsinBos taurus-NerolGt(CT)2.92020-07-01To be published
6PH7 (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Nerol2.92020-07-01To be published
6PGSASensoryOpsinsRhodopsinBos taurus-GeraniolGt(CT)2.92020-07-01To be published
6PGS (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Geraniol2.92020-07-01To be published
6PELASensoryOpsinsRhodopsinBos taurus-CitronellolGt(CT)3.192020-06-24To be published
6PEL (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Citronellol3.192020-06-24To be published
2G87ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.62006-09-02doi.org/10.1002/anie.200600595
4J4QASensoryOpsinsRhodopsinBos taurusOctyl β-D-Glucopyranoside-Gt(CT)2.652013-10-30doi.org/10.1002/anie.201302374
4J4Q (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl β-D-Glucopyranoside-2.652013-10-30doi.org/10.1002/anie.201302374
3OAXASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.62011-01-19doi.org/10.1016/j.bpj.2010.08.003
5W0PASensoryOpsinsRhodopsinHomo sapiens--Arrestin13.012017-08-09doi.org/10.1016/j.cell.2017.07.002
1U19ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.22004-10-12doi.org/10.1016/j.jmb.2004.07.044
1GZMASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.652003-11-20doi.org/10.1016/j.jmb.2004.08.090
2J4YASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.42007-09-25doi.org/10.1016/j.jmb.2007.03.007
3AYMASensoryOpsinsRhodopsinTodarodes pacificusAll-trans-Retinal--2.82011-08-17doi.org/10.1016/j.jmb.2011.08.044
3AYNASensoryOpsinsRhodopsinTodarodes pacificus9-cis-Retinal--2.72011-08-17doi.org/10.1016/j.jmb.2011.08.044
6OY9ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt/β1/γ13.92019-07-24doi.org/10.1016/j.molcel.2019.06.007
6OY9 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.92019-07-24doi.org/10.1016/j.molcel.2019.06.007
6OYAASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt/β1/γ13.32019-07-24doi.org/10.1016/j.molcel.2019.06.007
6OYA (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.32019-07-24doi.org/10.1016/j.molcel.2019.06.007
4X1HASensoryOpsinsRhodopsinBos taurusNonyl-β-D-Glucopyranoside-Gt(CT)2.292015-11-04doi.org/10.1016/j.str.2015.09.015
4X1H (No Gprot) ASensoryOpsinsRhodopsinBos taurusNonyl-β-D-Glucopyranoside-2.292015-11-04doi.org/10.1016/j.str.2015.09.015
1HZXASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.82001-07-04doi.org/10.1021/bi0155091
4BEZASensoryOpsinsRhodopsinBos taurus---3.32013-04-24doi.org/10.1038/embor.2013.44
4BEYASensoryOpsinsRhodopsinBos taurus--Gt(CT)2.92013-05-08doi.org/10.1038/embor.2013.44
4BEY (No Gprot) ASensoryOpsinsRhodopsinBos taurus--2.92013-05-08doi.org/10.1038/embor.2013.44
2Z73ASensoryOpsinsRhodopsinTodarodes pacificus11-cis-Retinal--2.52008-05-13doi.org/10.1038/nature06925
3CAPASensoryOpsinsRhodopsinBos taurus---2.92008-06-24doi.org/10.1038/nature07063
3DQBASensoryOpsinsRhodopsinBos taurus--Gt(CT)3.22008-09-23doi.org/10.1038/nature07330
3DQB (No Gprot) ASensoryOpsinsRhodopsinBos taurus--3.22008-09-23doi.org/10.1038/nature07330
3PQRASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)2.852011-03-09doi.org/10.1038/nature09789
3PQR (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-2.852011-03-09doi.org/10.1038/nature09789
3PXOASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--32011-03-09doi.org/10.1038/nature09789
2X72ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)32011-03-16doi.org/10.1038/nature09795
2X72 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-32011-03-16doi.org/10.1038/nature09795
4ZWJASensoryOpsinsRhodopsinHomo sapiens--Arrestin13.32015-07-29doi.org/10.1038/nature14656
4PXFASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Arrestin1 Finger Loop2.752014-09-17doi.org/10.1038/ncomms5801
5WKTASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Gt(CT)3.22017-12-13doi.org/10.1038/nprot.2017.135
5WKT (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-3.22017-12-13doi.org/10.1038/nprot.2017.135
8FCZASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.72023-08-30doi.org/10.1038/s41467-023-40911-9
8FD0ASensoryOpsinsRhodopsinBos taurus---3.712023-08-30doi.org/10.1038/s41467-023-40911-9
8FD1ASensoryOpsinsRhodopsinBos taurus---4.252023-08-30doi.org/10.1038/s41467-023-40911-9
9EPPASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-chim(Gi1-CtGq)/β1/γ24.062024-10-23doi.org/10.1038/s41467-024-53208-2
9EPP (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-4.062024-10-23doi.org/10.1038/s41467-024-53208-2
9EPQASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-chim(Gi1-CtGq)/β1/γ24.152024-10-23doi.org/10.1038/s41467-024-53208-2
9EPQ (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-4.152024-10-23doi.org/10.1038/s41467-024-53208-2
6CMOASensoryOpsinsRhodopsinHomo sapiens--Gi1/β1/γ24.52018-06-20doi.org/10.1038/s41586-018-0215-y
6CMO (No Gprot) ASensoryOpsinsRhodopsinHomo sapiens--4.52018-06-20doi.org/10.1038/s41586-018-0215-y
7MT8ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK15.82021-07-07doi.org/10.1038/s41586-021-03721-x
7MT9ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK172021-07-07doi.org/10.1038/s41586-021-03721-x
7MTAASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK14.12021-07-07doi.org/10.1038/s41586-021-03721-x
7MTBASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK142021-07-07doi.org/10.1038/s41586-021-03721-x
7ZBCASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
7ZBEASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
8A6CASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
8A6DASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
8A6EASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
5DGYASensoryOpsinsRhodopsinHomo sapiens--Arrestin17.72016-03-23doi.org/10.1038/sdata.2016.21
2HPYASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.82006-08-22doi.org/10.1073/pnas.0601765103
2I35ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.82006-10-17doi.org/10.1073/pnas.0608022103
2I36ASensoryOpsinsRhodopsinBos taurus---4.12006-10-17doi.org/10.1073/pnas.0608022103
2I37ASensoryOpsinsRhodopsinBos taurus---4.152006-10-17doi.org/10.1073/pnas.0608022103
1L9HASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.62002-05-15doi.org/10.1073/pnas.082666399
4A4MASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)3.32012-01-25doi.org/10.1073/pnas.1114089108
4A4M (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.32012-01-25doi.org/10.1073/pnas.1114089108
5TE3ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside--2.72017-03-15doi.org/10.1073/pnas.1617446114
5TE5ASensoryOpsinsRhodopsinBos taurus20-Methanoretinal--4.012017-03-15doi.org/10.1073/pnas.1617446114
6I9KASensoryOpsinsRhodopsinHasarius adansoni9-cis-Retinal--2.152019-07-03doi.org/10.1073/pnas.1902192116
2ZIYASensoryOpsinsRhodopsinTodarodes pacificus11-cis-Retinal--3.72008-05-06doi.org/10.1074/jbc.C800040200
6OFJASensoryOpsinsRhodopsinBos taurus---4.52019-08-21doi.org/10.1074/jbc.RA119.010089
3C9LASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.652008-08-05doi.org/10.1107/S0907444908017162
3C9MASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.42008-08-05doi.org/10.1107/S0907444908017162
6FUFASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Go3.122018-10-03doi.org/10.1126/sciadv.aat7052
6FUF (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.122018-10-03doi.org/10.1126/sciadv.aat7052
1F88ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.82000-08-04doi.org/10.1126/science.289.5480.739
4WW3ASensoryOpsinsRhodopsinTodarodes pacificusAll-trans-Retinal--2.82015-06-17doi.org/10.1371/journal.pone.0126970
5DYSASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.32016-08-10doi.org/10.15252/embr.201642671
5EN0ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)2.812016-08-10doi.org/10.15252/embr.201642671
5EN0 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-2.812016-08-10doi.org/10.15252/embr.201642671
2PEDASensoryOpsinsRhodopsinBos taurus9-cis-Retinal--2.952007-10-30doi.org/10.1529/biophysj.107.108225
6QNOASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gi1/β1/γ14.382019-07-10doi.org/10.7554/eLife.46041
6QNO (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-4.382019-07-10doi.org/10.7554/eLife.46041
9EPRASensoryOpsinsRhodopsinHasarius adansoniRetinal-Gi1/β1/γ24.92024-10-30doi.org/10.1038/s41467-024-53208-2
9EPR (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoniRetinal-4.92024-10-30doi.org/10.1038/s41467-024-53208-2
6NWEASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Gt(CT)2.712020-02-12To be published
6NWE (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-2.712020-02-12To be published
8P12ASensoryOpsinsRhodopsinBos taurus--Gi1/β1/γT13.212024-11-20To be published
8P12 (No Gprot) ASensoryOpsinsRhodopsinBos taurus--3.212024-11-20To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 4J4Q_nogp.zip



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