Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1H:H:?1 18.8125460
2R:R:F9 8.9975407
3R:R:Y10 4.9175407
4R:R:V20 10.2225446
5R:R:F24 5.68455
6R:R:Y29 6.535404
7R:R:Y30 8.522544
8R:R:M44 6.096587
9R:R:L72 5.355438
10R:R:I75 6.045407
11R:R:F91 6.2275487
12R:R:F103 7.158558
13R:R:E113 7.055405
14R:R:F115 7.412516
15R:R:I123 6.44407
16R:R:W126 9.73667615
17R:R:R135 8.25754109
18R:R:W175 9.85415
19R:R:R177 11.85425
20R:R:Y178 7.92286713
21R:R:E181 7.02833614
22R:R:M183 6.88502
23R:R:I189 7.342514
24R:R:D190 12.6675424
25R:R:Y191 7.064516
26R:R:Y192 6.73615
27R:R:T193 8.232525
28R:R:H195 11.216524
29R:R:F203 9.82714716
30R:R:Y206 8.405414
31R:R:V210 7.33414
32R:R:H211 9.515616
33R:R:L226 5.2375408
34R:R:E247 4.4925107
35R:R:F261 6.7975409
36R:R:W265 7.418508
37R:R:Y268 6.1275416
38R:R:F283 7.0075414
39R:R:F287 7.895414
40R:R:M288 4.9325414
41R:R:Y306 13.218509
42R:R:M309 5.158537
43R:R:N310 7538
44R:R:F313 10.7675408
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:Y10 R:R:Y192 66.04967.94YesYes075
2R:R:E5 R:R:Y10 64.41954.49NoYes067
3R:R:E5 R:R:T193 63.965812.7NoYes065
4R:R:R177 R:R:T193 28.71036.47YesYes255
5R:R:I179 R:R:R177 28.99317.52NoYes215
6R:R:I179 R:R:P180 56.58035.08NoNo013
7R:R:P180 R:R:Q184 32.9459.47NoNo033
8R:R:P23 R:R:Q184 30.354314.21NoNo053
9R:R:P23 R:R:Q28 19.43717.9NoNo055
10R:R:Q28 R:R:Y30 14.157711.27NoYes454
11R:R:D190 R:R:T193 29.441313.01YesYes245
12R:R:D190 R:R:I179 28.74118.4YesNo241
13R:R:F24 R:R:P180 26.9995.78YesNo053
14R:R:F24 R:R:N8 17.09568.46YesNo054
15R:R:F9 R:R:N8 12.53334.83YesNo074
16R:R:F9 R:R:P23 12.474411.56YesNo075
17R:R:F9 R:R:S22 12.432410.57YesNo075
18R:R:F103 R:R:F24 10.50554.29YesYes585
19R:R:E181 R:R:S186 49.36285.75YesNo045
20R:R:F293 R:R:S186 48.95116.61NoNo055
21R:R:F293 R:R:L40 23.212415.83NoNo055
22R:R:L40 R:R:M183 19.57154.24NoYes052
23R:R:F37 R:R:M183 14.7857.46NoYes052
24R:R:F37 R:R:Y29 13.83849.28NoYes054
25R:R:F293 R:R:Y43 31.76875.16NoNo054
26R:R:L47 R:R:Y43 30.743614.07NoNo074
27R:R:L47 R:R:M44 30.31514.24NoYes077
28R:R:L95 R:R:M44 10.90884.24NoYes067
29R:R:I48 R:R:V87 12.42684.61NoNo066
30R:R:F88 R:R:V87 10.6685.24NoNo046
31R:R:Y191 R:R:Y192 39.26344.96YesYes165
32R:R:I189 R:R:Y191 77.11248.46YesYes146
33R:R:F203 R:R:I189 40.081211.3YesYes164
34R:R:F203 R:R:Y206 38.62764.13YesYes164
35R:R:H211 R:R:Y206 35.095911.98YesYes164
36R:R:H211 R:R:W126 33.70125.29YesYes165
37R:R:P215 R:R:W126 29.564513.51NoYes095
38R:R:L125 R:R:P215 29.01279.85NoNo079
39R:R:F261 R:R:L125 28.4338.53YesNo097
40R:R:F261 R:R:W265 25.730311.02YesYes098
41R:R:C264 R:R:W265 23.87067.84NoYes088
42R:R:C264 R:R:Y301 23.37774.03NoNo085
43R:R:N302 R:R:Y301 22.495417.44NoNo095
44R:R:D83 R:R:N302 21.59644.04NoNo099
45R:R:D83 R:R:N55 21.179113.46NoNo099
46R:R:N55 R:R:P303 20.37256.52NoNo099
47R:R:P291 R:R:V271 1003.53NoNo065
48R:R:P267 R:R:P291 98.41481.95NoNo096
49R:R:F294 R:R:P267 97.64182.89NoNo079
50R:R:F294 R:R:I263 96.882.51NoNo075
51R:R:I259 R:R:I263 96.13781.47NoNo055
52R:R:I255 R:R:I259 95.4461.47NoNo055
53R:R:I255 R:R:R252 90.38236.26NoNo057
54R:R:I256 R:R:R252 89.738111.27NoNo057
55R:R:I256 R:R:M309 87.02144.37NoYes357
56R:R:E249 R:R:M309 53.49954.06NoYes077
57R:R:E249 R:R:N310 26.8737.89NoYes078
58R:R:N310 R:R:Y306 48.5038.14YesYes089
59R:R:F313 R:R:Y306 42.48723.73YesYes089
60R:R:F313 R:R:T58 21.30795.19YesNo089
61R:R:P303 R:R:T58 19.03945.25NoNo099
62R:R:M253 R:R:M309 32.96748.66NoYes387
63R:R:M253 R:R:N310 22.97445.61NoYes388
64R:R:F313 R:R:V61 14.06817.87YesNo087
65R:R:F313 R:R:I307 17.5696.28YesNo087
66R:R:E249 R:R:V250 33.66484.28NoNo078
67R:R:R135 R:R:V250 39.8465.23YesNo098
68R:R:L72 R:R:N73 12.30644.12YesNo088
69R:R:A153 R:R:P71 13.1553.74NoNo076
70R:R:A153 R:R:Y74 10.97615.34NoNo075
71R:R:I189 R:R:Y178 43.19564.84YesYes143
72R:R:F115 R:R:Y178 36.47676.19YesYes163
73R:R:F115 R:R:L119 26.89828.53YesNo065
74R:R:I123 R:R:L119 23.59894.28YesNo075
75R:R:I123 R:R:W161 18.60811.74YesNo079
76R:R:N78 R:R:W161 13.56397.91NoNo099
77R:R:E247 R:R:R135 27.7726.98YesYes1079
78R:R:E247 R:R:V139 23.12284.28YesNo078
79R:R:L226 R:R:V139 21.50965.96YesNo088
80R:R:C140 R:R:L226 14.97833.17NoYes078
81R:R:C140 R:R:Y136 13.33155.38NoNo077
82R:R:Y191 R:R:Y268 12.59496.95YesYes166
83R:R:M288 R:R:Y192 47.00464.79YesYes145
84R:R:M288 R:R:Y268 12.86374.79YesYes146
85R:R:I255 R:R:Y223 10.52516.04NoNo059
86R:R:M288 R:R:V271 96.8526.09YesNo045
87R:R:E113 R:R:F103 10.33194.66YesYes058
88R:R:E181 R:R:Y191 28.99595.61YesYes146
89R:R:E181 R:R:M288 38.84614.06YesYes144
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8FD1
Class A
SubFamily Sensory
Type Opsins
SubType Rhodopsin
Species Bos Taurus
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 4.25
Date 2023-08-30
D.O.I. 10.1038/s41467-023-40911-9
Net Summary
Imin 4.05
Number of Linked Nodes 302
Number of Links 344
Number of Hubs 44
Number of Links mediated by Hubs 168
Number of Communities 10
Number of Nodes involved in Communities 66
Number of Links involved in Communities 90
Path Summary
Number Of Nodes in MetaPath 90
Number Of Links MetaPath 89
Number of Shortest Paths 81824
Length Of Smallest Path 3
Average Path Length 18.1732
Length of Longest Path 38
Minimum Path Strength 1.47
Average Path Strength 6.866
Maximum Path Strength 34.26
Minimum Path Correlation 0.7
Average Path Correlation 0.966547
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 3.7037
Average % Of Corr. Nodes 60.2633
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 38.7966
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• opsin binding   • protein binding   • binding   • arrestin family protein binding   • G protein-coupled photoreceptor activity   • molecular transducer activity   • photoreceptor activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • vitamin binding   • retinal binding   • isoprenoid binding   • retinoid binding   • lipid binding   • 11-cis retinal binding   • small molecule binding   • G-protein alpha-subunit binding   • enzyme regulator activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • hydrolase activity   • guanyl ribonucleotide binding   • GDP binding   • purine ribonucleotide binding   • ion binding   • ribonucleoside triphosphate phosphatase activity   • anion binding   • molecular function regulator activity   • heterocyclic compound binding   • carbohydrate derivative binding   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • ribonucleotide binding   • pyrophosphatase activity   • GTPase activity   • nucleoside-triphosphatase regulator activity   • GTPase regulator activity   • purine ribonucleoside triphosphate binding   • guanyl-nucleotide exchange factor activity   • nucleoside phosphate binding   • purine nucleotide binding   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • cation binding   • transition metal ion binding   • zinc ion binding   • metal ion binding   • identical protein binding   • multicellular organismal process   • rod bipolar cell differentiation   • cellular developmental process   • sensory organ development   • retina development in camera-type eye   • visual system development   • neural retina development   • neurogenesis   • multicellular organism development   • eye morphogenesis   • neuron differentiation   • cell differentiation   • anatomical structure development   • animal organ morphogenesis
Gene OntologyBiological Process• multicellular organismal process   • rod bipolar cell differentiation   • cellular developmental process   • sensory organ development   • retina development in camera-type eye   • visual system development   • neural retina development   • neurogenesis   • multicellular organism development   • eye morphogenesis   • neuron differentiation   • cell differentiation   • anatomical structure development   • animal organ morphogenesis   • sensory system development   • system development   • developmental process   • camera-type eye morphogenesis   • eye development   • animal organ development   • nervous system development   • retinal bipolar neuron differentiation   • glutamatergic neuron differentiation   • generation of neurons   • retina morphogenesis in camera-type eye   • anatomical structure morphogenesis   • sensory organ morphogenesis   • camera-type eye development   • cellular process   • cellular response to stimulus   • response to light stimulus   • response to stimulus   • cellular response to light stimulus   • response to radiation   • response to abiotic stimulus   • cellular response to radiation   • cellular response to abiotic stimulus   • cellular response to environmental stimulus   • regulation of cellular process   • signaling   • detection of abiotic stimulus   • cell communication   • signal transduction   • detection of light stimulus   • phototransduction   • detection of external stimulus   • regulation of biological process   • biological regulation   • detection of visible light   • response to external stimulus   • detection of stimulus   • G protein-coupled receptor signaling pathway   • G protein-coupled opsin signaling pathway   • phototransduction, visible light   • response to light intensity   • podosome assembly   • organelle assembly   • protein-containing complex organization   • membraneless organelle assembly   • cellular component organization   • cellular component biogenesis   • organelle organization   • cellular component assembly   • protein-containing complex assembly   • cellular component organization or biogenesis   • biosynthetic process   • metabolic process   • macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • multicellular organismal-level homeostasis   • homeostatic process   • anatomical structure homeostasis   • tissue homeostasis   • retina homeostasis   • photoreceptor cell maintenance   • absorption of visible light   • light absorption   • microtubule cytoskeleton organization   • microtubule-based process   • cytoskeleton organization   • sensory perception of light stimulus   • system process   • sensory perception   • nervous system process   • visual perception   • thermoception   • sensory perception of temperature stimulus   • detection of temperature stimulus involved in sensory perception   • response to temperature stimulus   • detection of temperature stimulus involved in thermoception   • detection of temperature stimulus   • detection of stimulus involved in sensory perception   • taxis   • thermotaxis   • locomotion   • cellular anatomical structure   • membrane   • cell-cell junction   • anchoring junction   • cell junction   • membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection
Gene OntologyCellular Component• cellular anatomical structure   • membrane   • cell-cell junction   • anchoring junction   • cell junction   • membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle   • organelle membrane   • cell periphery   • protein-containing complex   • plasma membrane protein complex   • plasma membrane   • plasma membrane signaling receptor complex   • G protein-coupled receptor complex   • membrane protein complex   • receptor complex   • sperm midpiece   • 9+2 motile cilium   • sperm flagellum   • motile cilium   • photoreceptor inner segment membrane   • plasma membrane region   • photoreceptor inner segment   • ciliary membrane   • photoreceptor outer segment membrane   • bounding membrane of organelle   • cell projection membrane   • Golgi membrane   • intracellular anatomical structure   • Golgi apparatus   • intracellular membrane-bounded organelle   • endomembrane system   • intracellular organelle   • cytoplasm   • outer membrane   • sperm head   • sperm head plasma membrane   • sperm plasma membrane   • rod photoreceptor outer segment
SCOP2Domain Identifier• G protein-coupled receptor-like
SCOP2Family Identifier• G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNAG
PDB ResiduesH:H:?1 H:H:?2 H:H:?5
Environment DetailsOpen EMBL-EBI Page
CodeNAG
NameN-Acetylglucosamine
SynonymsN-Acetyl-D-glucosamine
Identifier
FormulaC8 H15 N O6
Molecular Weight221.208
SMILES
PubChem24139
Formal Charge0
Total Atoms30
Total Chiral Atoms5
Total Bonds30
Total Aromatic Bonds0

CodeBMA
PDB ResiduesH:H:?3
Environment DetailsOpen EMBL-EBI Page
CodeBMA
Namebeta-D-mannopyranose
Synonymsbeta-D-mannose; D-mannose; mannose
Identifier
FormulaC6 H12 O6
Molecular Weight180.156
SMILES
PubChem439680
Formal Charge0
Total Atoms24
Total Chiral Atoms5
Total Bonds24
Total Aromatic Bonds0

CodeMAN
PDB ResiduesH:H:?4 H:H:?6
Environment DetailsOpen EMBL-EBI Page
CodeMAN
Namealpha-D-mannopyranose
Synonymsalpha-D-mannose; D-mannose; mannose
Identifier
FormulaC6 H12 O6
Molecular Weight180.156
SMILES
PubChem185698
Formal Charge0
Total Atoms24
Total Chiral Atoms5
Total Bonds24
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP02699
Sequence
>8FD1_Chain_R
MNGTEGPNF YVPFSNKTG VVRSPFEAP QYYLAEPWQ FSMLAAYMF 
LLIMLGFPI NFLTLYVTV QTPLNYILL NLAVADLFM VFGGFTTTL 
YTSLHGYFV FGPTGCNLE GFFATLGGE IALWSLVVL AIERYVVVC 
KPMSNFRNH AIMGVAFTW VMALACAAP PLVGWSRYI PEGMQCSCG 
IDYYTPHEE TNNESFVIY MFVVHFIIP LIVIFFCYG QLVFTVATT 
QKAEKEVTR MVIIMVIAF LICWLPYAG VAFYIFTHQ GSDFGPIFM 
TIPAFFAKT SAVYNPVIY IMMNKQFRN CMVTTLCC


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8P15ASensoryOpsinRhodopsinBos taurus--Gi1/β1/γT15.92024-11-20To be published
8P15 (No Gprot) ASensoryOpsinRhodopsinBos taurus--5.92024-11-20To be published
8P13ASensoryOpsinRhodopsinBos taurus--Gi1/β1/γT15.22024-11-20To be published
8P13 (No Gprot) ASensoryOpsinRhodopsinBos taurus--5.22024-11-20To be published
8P12ASensoryOpsinsRhodopsinBos taurus--Gi1/β1/γT13.212024-11-20To be published
8P12 (No Gprot) ASensoryOpsinsRhodopsinBos taurus--3.212024-11-20To be published
9EPRASensoryOpsinsRhodopsinHasarius adansoniRetinal-Gi1/β1/γ24.92024-10-30doi.org/10.1038/s41467-024-53208-2
9EPR (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoniRetinal-4.92024-10-30doi.org/10.1038/s41467-024-53208-2
9EPQASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-chim(Gi1-CtGq)/β1/γ24.152024-10-2310.1038/s41467-024-53208-2
9EPQ (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-4.152024-10-2310.1038/s41467-024-53208-2
9EPPASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-chim(Gi1-CtGq)/β1/γ24.062024-10-2310.1038/s41467-024-53208-2
9EPP (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-4.062024-10-2310.1038/s41467-024-53208-2
8FD1ASensoryOpsinsRhodopsinBos taurus---4.252023-08-3010.1038/s41467-023-40911-9
8FD1 (Multimeric) ASensoryOpsinsRhodopsinBos taurus--4.252023-08-3010.1038/s41467-023-40911-9
8FD0ASensoryOpsinsRhodopsinBos taurus---3.712023-08-3010.1038/s41467-023-40911-9
8FD0 (Multimeric) ASensoryOpsinsRhodopsinBos taurus--3.712023-08-3010.1038/s41467-023-40911-9
8FCZASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.72023-08-3010.1038/s41467-023-40911-9
8FCZ (Multimeric) ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal-3.72023-08-3010.1038/s41467-023-40911-9
8A6EASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
8A6DASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
8A6CASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
7ZBEASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
7ZBCASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
7MTBASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK142021-07-0710.1038/s41586-021-03721-x
7MTB (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-42021-07-0710.1038/s41586-021-03721-x
7MTAASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK14.12021-07-0710.1038/s41586-021-03721-x
7MTA (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-4.12021-07-0710.1038/s41586-021-03721-x
7MT9ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK172021-07-0710.1038/s41586-021-03721-x
7MT9 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-72021-07-0710.1038/s41586-021-03721-x
7MT8ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK15.82021-07-0710.1038/s41586-021-03721-x
7MT8 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-5.82021-07-0710.1038/s41586-021-03721-x
6PH7ASensoryOpsinsRhodopsinBos taurus-NerolGt(CT)2.92020-07-01To be published
6PH7 (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Nerol2.92020-07-01To be published
6PGSASensoryOpsinsRhodopsinBos taurus-GeraniolGt(CT)2.92020-07-01To be published
6PGS (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Geraniol2.92020-07-01To be published
6PELASensoryOpsinsRhodopsinBos taurus-CitronellolGt(CT)3.192020-06-24To be published
6PEL (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Citronellol3.192020-06-24To be published
6NWEASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Gt(CT)2.712020-02-12To be published
6NWE (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-2.712020-02-12To be published
6OFJASensoryOpsinsRhodopsinBos taurus---4.52019-08-2110.1074/jbc.RA119.010089
6OFJ (Multimeric) ASensoryOpsinsRhodopsinBos taurus--4.52019-08-2110.1074/jbc.RA119.010089
6OYAASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt/β1/γ13.32019-07-2410.1016/j.molcel.2019.06.007
6OYA (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.32019-07-2410.1016/j.molcel.2019.06.007
6OY9ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt/β1/γ13.92019-07-2410.1016/j.molcel.2019.06.007
6OY9 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.92019-07-2410.1016/j.molcel.2019.06.007
6QNOASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gi1/β1/γ14.382019-07-1010.7554/eLife.46041
6QNO (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-4.382019-07-1010.7554/eLife.46041
6I9KASensoryOpsinsRhodopsinHasarius adansoni9-cis-Retinal--2.152019-07-0310.1073/pnas.1902192116
6FUFASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Go3.122018-10-0310.1126/sciadv.aat7052
6FUF (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.122018-10-0310.1126/sciadv.aat7052
6CMOASensoryOpsinsRhodopsinHomo sapiens--Gi1/β1/γ24.52018-06-2010.1038/s41586-018-0215-y
6CMO (No Gprot) ASensoryOpsinsRhodopsinHomo sapiens--4.52018-06-2010.1038/s41586-018-0215-y
6FKDASensoryOpsinsRhodopsinBos taurus-PubChem 137349183-2.492018-04-0410.1073/pnas.1718084115
6FKCASensoryOpsinsRhodopsinBos taurus-PubChem 132473039-2.462018-04-0410.1073/pnas.1718084115
6FKBASensoryOpsinsRhodopsinBos taurus-PubChem 132473038-3.032018-04-0410.1073/pnas.1718084115
6FKAASensoryOpsinsRhodopsinBos taurus-PubChem 132473037-2.72018-04-0410.1073/pnas.1718084115
6FK9ASensoryOpsinsRhodopsinBos taurus-PubChem 132473036-2.632018-04-0410.1073/pnas.1718084115
6FK8ASensoryOpsinsRhodopsinBos taurus-PubChem 132473035-2.872018-04-0410.1073/pnas.1718084115
6FK7ASensoryOpsinsRhodopsinBos taurus-PubChem 132473034-2.622018-04-0410.1073/pnas.1718084115
6FK6ASensoryOpsinsRhodopsinBos taurus-PubChem 132473033-2.362018-04-0410.1073/pnas.1718084115
5WKTASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Gt(CT)3.22017-12-1310.1038/nprot.2017.135
5WKT (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-3.22017-12-1310.1038/nprot.2017.135
5W0PASensoryOpsinsRhodopsinHomo sapiens--Arrestin13.012017-08-0910.1016/j.cell.2017.07.002
5TE5ASensoryOpsinsRhodopsinBos taurus20-Methanoretinal--4.012017-03-1510.1073/pnas.1617446114
5TE3ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside--2.72017-03-1510.1073/pnas.1617446114
5DYSASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.32016-08-1010.15252/embr.201642671
5EN0ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)2.812016-08-1010.15252/embr.201642671
5EN0 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-2.812016-08-1010.15252/embr.201642671
5DGYASensoryOpsinsRhodopsinHomo sapiens--Arrestin17.72016-03-2310.1038/sdata.2016.21
4X1HASensoryOpsinsRhodopsinBos taurusNonyl-β-D-Glucopyranoside-Gt(CT)2.292015-11-0410.1016/j.str.2015.09.015
4X1H (No Gprot) ASensoryOpsinsRhodopsinBos taurusNonyl-β-D-Glucopyranoside-2.292015-11-0410.1016/j.str.2015.09.015
4ZWJASensoryOpsinsRhodopsinHomo sapiens--Arrestin13.32015-07-2910.1038/nature14656
4WW3ASensoryOpsinsRhodopsinTodarodes pacificusAll-trans-Retinal--2.82015-06-1710.1371/journal.pone.0126970
4PXFASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Arrestin1 Finger Loop2.752014-09-1710.1038/ncomms5801
4J4QASensoryOpsinsRhodopsinBos taurusOctyl β-D-Glucopyranoside-Gt(CT)2.652013-10-3010.1002/anie.201302374
4J4Q (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl β-D-Glucopyranoside-2.652013-10-3010.1002/anie.201302374
4BEYASensoryOpsinsRhodopsinBos taurus--Gt(CT)2.92013-05-0810.1038/embor.2013.44
4BEY (No Gprot) ASensoryOpsinsRhodopsinBos taurus--2.92013-05-0810.1038/embor.2013.44
4BEZASensoryOpsinsRhodopsinBos taurus---3.32013-04-2410.1038/embor.2013.44
4A4MASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)3.32012-01-2510.1073/pnas.1114089108
4A4M (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.32012-01-2510.1073/pnas.1114089108
3AYNASensoryOpsinsRhodopsinTodarodes pacificus9-cis-Retinal--2.72011-08-1710.1016/j.jmb.2011.08.044
3AYMASensoryOpsinsRhodopsinTodarodes pacificusAll-trans-Retinal--2.82011-08-1710.1016/j.jmb.2011.08.044
2X72ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)32011-03-1610.1038/nature09795
2X72 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-32011-03-1610.1038/nature09795
3PXOASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--32011-03-0910.1038/nature09789
3PQRASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)2.852011-03-0910.1038/nature09789
3PQR (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-2.852011-03-0910.1038/nature09789
3OAXASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.62011-01-1910.1016/j.bpj.2010.08.003
3DQBASensoryOpsinsRhodopsinBos taurus--Gt(CT)3.22008-09-2310.1038/nature07330
3DQB (No Gprot) ASensoryOpsinsRhodopsinBos taurus--3.22008-09-2310.1038/nature07330
3C9MASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.42008-08-0510.1107/S0907444908017162
3C9LASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.652008-08-0510.1107/S0907444908017162
3CAPASensoryOpsinsRhodopsinBos taurus---2.92008-06-2410.1038/nature07063
3CAP (Multimeric) ASensoryOpsinsRhodopsinBos taurus--2.92008-06-2410.1038/nature07063
2Z73ASensoryOpsinsRhodopsinTodarodes pacificus11-cis-Retinal--2.52008-05-1310.1038/nature06925
2ZIYASensoryOpsinsRhodopsinTodarodes pacificus11-cis-Retinal--3.72008-05-0610.1074/jbc.C800040200
2PEDASensoryOpsinsRhodopsinBos taurus9-cis-Retinal--2.952007-10-3010.1529/biophysj.107.108225
2J4YASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.42007-09-2510.1016/j.jmb.2007.03.007
2I37ASensoryOpsinsRhodopsinBos taurus---4.152006-10-1710.1073/pnas.0608022103
2I36ASensoryOpsinsRhodopsinBos taurus---4.12006-10-1710.1073/pnas.0608022103
2I35ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.82006-10-1710.1073/pnas.0608022103
2G87ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.62006-09-0210.1002/anie.200600595
2HPYASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.82006-08-2210.1073/pnas.0601765103
1U19ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.22004-10-1210.1016/j.jmb.2004.07.044
1GZMASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.652003-11-2010.1016/j.jmb.2004.08.090
1L9HASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.62002-05-1510.1073/pnas.082666399
1HZXASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.82001-07-0410.1021/bi0155091
1F88ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.82000-08-0410.1126/science.289.5480.739




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8FD1.zip



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