Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:V11 4.244528
2R:R:N15 12.155427
3R:R:V20 8.896526
4R:R:S22 4.97425
5R:R:P23 7.235625
6R:R:F24 8.01333625
7R:R:Q28 6.898525
8R:R:Y29 8.11404
9R:R:Y30 8.205624
10R:R:L31 7.325424
11R:R:Q36 8.14452
12R:R:Y43 6.608514
13R:R:H65 7.062535
14R:R:L68 5.49167637
15R:R:N78 6.2275479
16R:R:D83 7.4875469
17R:R:F91 8.375407
18R:R:F103 5.092528
19R:R:F105 4.955427
20R:R:G109 2.065425
21R:R:C110 5.2075429
22R:R:E113 5.345405
23R:R:E122 7.5275416
24R:R:I123 5.6507
25R:R:W126 11.2925415
26R:R:Y136 7.226587
27R:R:F148 6.43833607
28R:R:P170 4.8725417
29R:R:P171 7.7725415
30R:R:L172 3.805415
31R:R:W175 9.076515
32R:R:R177 12.6275415
33R:R:Y178 6.25613
34R:R:P180 6.466523
35R:R:Q184 7.13423
36R:R:D190 9.37514
37R:R:Y191 5.07333616
38R:R:Y192 7.396515
39R:R:T193 6.136515
40R:R:H195 14.8075414
41R:R:N200 6.2475414
42R:R:F203 9.96616
43R:R:M207 7.6375415
44R:R:H211 6.80857716
45R:R:F212 4.4425408
46R:R:L216 3.13407
47R:R:Y223 8.395419
48R:R:E247 6.53407
49R:R:M257 7.71418
50R:R:F261 5.6625419
51R:R:W265 9.898518
52R:R:Y268 8.47506
53R:R:F283 9.65414
54R:R:M288 4.8575414
55R:R:P303 4.935469
56R:R:Y306 9.24519
57R:R:I307 5.52407
58R:R:F313 8.5125408
59L:L:?1 7.32857700
60H:H:?1 16.064520
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:F283 R:R:M288 11.29923.73YesYes144
2R:R:M288 R:R:Y191 11.67663.59YesYes146
3R:R:Y191 R:R:Y268 26.5885.96YesYes066
4L:L:?1 R:R:Y268 31.560115.59YesYes006
5L:L:?1 R:R:K296 51.85369.38YesNo007
6R:R:F91 R:R:K296 51.643612.41YesNo077
7R:R:F91 R:R:L47 55.658312.18YesNo077
8R:R:L47 R:R:Y43 52.003610.55NoYes174
9R:R:M44 R:R:Y43 1003.59NoYes074
10R:R:M44 R:R:T94 99.676.02NoNo077
11R:R:S186 R:R:T94 95.71036.4NoNo057
12R:R:E113 R:R:S186 95.32044.31YesNo055
13R:R:E113 R:R:F103 93.29558.16YesYes058
14R:R:C110 R:R:F103 43.97424.19YesYes298
15R:R:C110 R:R:P180 36.08733.77YesYes293
16R:R:P180 R:R:P23 50.07627.79YesYes235
17R:R:P23 R:R:V11 29.59533.53YesYes258
18R:R:V11 R:R:V20 18.24364.81YesYes286
19R:R:C187 R:R:F103 36.77478.38NoYes298
20R:R:C187 R:R:P180 36.10735.65NoYes293
21H:H:?1 R:R:V20 11.80414.01YesYes206
22R:R:P180 R:R:Q184 21.02347.9YesYes233
23R:R:P23 R:R:Q28 14.80894.74YesYes255
24R:R:Q184 R:R:Q28 14.63646.4YesYes235
25R:R:Q28 R:R:Y30 19.64112.4YesYes254
26R:R:V19 R:R:Y30 19.8065.05NoYes034
27R:R:T17 R:R:V19 14.86146.35NoNo063
28R:R:F103 R:R:F105 21.77593.22YesYes287
29R:R:F105 R:R:V104 19.04117.87YesNo074
30R:R:V104 R:R:Y102 17.166211.36NoNo044
31R:R:P27 R:R:Y102 16.19636.95NoNo084
32R:R:P27 R:R:Y29 15.22149.74NoYes084
33R:R:F37 R:R:Y29 12.26667.22NoYes054
34R:R:A32 R:R:F37 11.27174.16NoNo035
35R:R:A32 R:R:Q36 10.27174.55NoYes032
36R:R:L40 R:R:T94 10.27174.42NoNo057
37L:L:?1 R:R:W265 38.20965.3YesYes008
38R:R:C264 R:R:W265 48.616413.06NoYes188
39R:R:T297 R:R:Y301 54.41594.99NoNo165
40R:R:C264 R:R:S298 44.33425.16NoNo189
41R:R:N302 R:R:S298 93.91057.45NoNo199
42R:R:N302 R:R:Y306 92.62314.65NoYes199
43R:R:L79 R:R:Y306 43.81923.52NoYes099
44R:R:D83 R:R:L79 42.95434.07YesNo099
45R:R:D83 R:R:P303 39.24466.44YesYes699
46R:R:I307 R:R:P303 35.85483.39YesYes079
47R:R:F313 R:R:I307 32.18513.77YesYes087
48R:R:F313 R:R:L68 28.43549.74YesYes087
49R:R:H65 R:R:L68 16.49883.86YesYes357
50R:R:M257 R:R:Y306 60.47814.37YesYes189
51R:R:M257 R:R:R135 29.71034.96YesNo189
52R:R:L131 R:R:R135 31.280215.79NoNo099
53R:R:I75 R:R:L131 30.34524.28NoNo079
54R:R:I75 R:R:V130 19.7316.14NoNo077
55R:R:E134 R:R:V130 16.73125.7NoNo087
56R:R:E134 R:R:F148 15.721313.99NoYes087
57R:R:I75 R:R:S127 10.62176.19NoNo078
58R:R:P171 R:R:Y178 11.909112.52YesYes153
59R:R:L172 R:R:Y178 13.15653.52YesYes153
60L:L:?1 R:R:E122 15.43634.41YesYes006
61L:L:?1 R:R:M207 46.27411.28YesYes005
62R:R:E122 R:R:H211 18.963611.08YesYes166
63R:R:H211 R:R:M207 15.34386.57YesYes165
64R:R:H211 R:R:W126 17.31627.41YesYes165
65R:R:A132 R:R:Y223 11.65669.34NoYes099
66R:R:M257 R:R:Y223 28.80287.18YesYes189
67R:R:A132 R:R:C222 10.62171.81NoNo098
68R:R:F203 R:R:M207 33.4656.22YesYes165
69R:R:F203 R:R:I189 11.49166.28YesNo064
70R:R:H211 R:R:V210 10.75926.92YesNo164
71R:R:V254 R:R:Y223 19.7568.83NoYes089
72R:R:V227 R:R:V254 18.76114.81NoNo058
73R:R:K231 R:R:V227 17.76124.55NoNo055
74R:R:E247 R:R:K231 12.686512.15YesNo075
75R:R:K325 R:R:T319 10.59171.5NoNo034
76R:R:H65 R:R:T319 11.62162.74YesNo054
77R:R:Y191 R:R:Y192 10.729211.91YesYes165
78R:R:T297 R:R:Y43 50.45376.24NoYes164
79R:R:S298 R:R:Y301 50.06376.36NoNo195
80R:R:F203 R:R:P171 11.37417.22YesYes165
81R:R:I189 R:R:Y178 10.52923.63NoYes043
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:F91 R:R:K296 12.41 0 Yes No 7 7 2 1
R:R:E122 R:R:L125 3.98 1 Yes No 6 7 1 2
R:R:C167 R:R:E122 10.64 1 No Yes 5 6 2 1
R:R:E122 R:R:H211 11.08 1 Yes Yes 6 6 1 2
L:L:?1 R:R:E122 4.41 0 Yes Yes 0 6 0 1
R:R:F261 R:R:L125 3.65 1 Yes No 9 7 2 2
R:R:L125 R:R:W265 18.22 1 No Yes 7 8 2 1
R:R:C167 R:R:M207 6.48 1 No Yes 5 5 2 1
R:R:C167 R:R:H211 4.42 1 No Yes 5 6 2 2
R:R:E181 R:R:Y268 5.61 0 No Yes 4 6 2 1
R:R:Y191 R:R:Y268 5.96 1 Yes Yes 6 6 2 1
R:R:F203 R:R:M207 6.22 1 Yes Yes 6 5 2 1
R:R:H211 R:R:M207 6.57 1 Yes Yes 6 5 2 1
L:L:?1 R:R:M207 11.28 0 Yes Yes 0 5 0 1
R:R:F212 R:R:I213 3.77 0 Yes No 8 4 1 2
R:R:A269 R:R:F212 8.32 0 No Yes 7 8 2 1
R:R:F261 R:R:W265 9.02 1 Yes Yes 9 8 2 1
R:R:C264 R:R:W265 13.06 1 No Yes 8 8 2 1
R:R:A295 R:R:W265 3.89 0 No Yes 8 8 2 1
L:L:?1 R:R:W265 5.3 0 Yes Yes 0 8 0 1
R:R:P291 R:R:Y268 12.52 0 No Yes 6 6 2 1
L:L:?1 R:R:Y268 15.59 0 Yes Yes 0 6 0 1
L:L:?1 R:R:K296 9.38 0 Yes No 0 7 0 1
L:L:?1 R:R:F212 3.24 0 Yes Yes 0 8 0 1
R:R:A292 R:R:Y268 2.67 0 No Yes 5 6 2 1
R:R:F212 R:R:L216 2.44 0 Yes Yes 8 7 1 2
R:R:F261 R:R:L216 2.44 1 Yes Yes 9 7 2 2
L:L:?1 R:R:A117 2.1 0 Yes No 0 5 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 3PQR_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.44
Number of Linked Nodes 323
Number of Links 380
Number of Hubs 60
Number of Links mediated by Hubs 213
Number of Communities 9
Number of Nodes involved in Communities 90
Number of Links involved in Communities 130
Path Summary
Number Of Nodes in MetaPath 82
Number Of Links MetaPath 81
Number of Shortest Paths 84528
Length Of Smallest Path 3
Average Path Length 16.6537
Length of Longest Path 40
Minimum Path Strength 1.47
Average Path Strength 7.017
Maximum Path Strength 35.1033
Minimum Path Correlation 0.7
Average Path Correlation 0.952811
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.7037
Average % Of Corr. Nodes 57.7827
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 48.7935
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• guanyl nucleotide binding   • binding   • nucleotide binding   • GDP binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • protein binding   • kinase binding   • enzyme binding   • protein kinase binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • signaling receptor binding   • G protein-coupled receptor binding   • acyl binding   • GTP binding   • purine ribonucleoside triphosphate binding   • cation binding   • metal ion binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • detection of light stimulus involved in visual perception   • detection of light stimulus   • response to light stimulus   • multicellular organismal process   • detection of external stimulus   • sensory perception of light stimulus   • system process   • nervous system process   • response to stimulus   • response to external stimulus   • detection of abiotic stimulus   • detection of stimulus   • sensory perception   • detection of light stimulus involved in sensory perception
Gene OntologyBiological Process• detection of light stimulus involved in visual perception   • detection of light stimulus   • response to light stimulus   • multicellular organismal process   • detection of external stimulus   • sensory perception of light stimulus   • system process   • nervous system process   • response to stimulus   • response to external stimulus   • detection of abiotic stimulus   • detection of stimulus   • sensory perception   • detection of light stimulus involved in sensory perception   • response to abiotic stimulus   • response to radiation   • visual perception   • detection of stimulus involved in sensory perception   • phototransduction   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • signaling   • biological regulation   • detection of visible light   • cell communication   • cellular process   • signal transduction   • phototransduction, visible light   • negative regulation of hydrolase activity   • regulation of molecular function   • regulation of catalytic activity   • regulation of hydrolase activity   • negative regulation of cyclic-nucleotide phosphodiesterase activity   • negative regulation of molecular function   • negative regulation of catalytic activity   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • membrane-bounded organelle   • non-motile cilium   • membrane   • plasma membrane   • cilium   • 9+0 non-motile cilium   • neuron projection   • ciliary membrane   • photoreceptor outer segment membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell periphery   • cell projection   • bounding membrane of organelle
Gene OntologyCellular Component• membrane-bounded organelle   • non-motile cilium   • membrane   • plasma membrane   • cilium   • 9+0 non-motile cilium   • neuron projection   • ciliary membrane   • photoreceptor outer segment membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell periphery   • cell projection   • bounding membrane of organelle   • cellular anatomical structure   • photoreceptor cell cilium   • organelle   • plasma membrane region   • organelle membrane   • cell projection membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • photoreceptor inner segment   • photoreceptor disc membrane   • plasma membrane signaling receptor complex   • G protein-coupled receptor complex   • receptor complex   • intracellular anatomical structure   • cytoplasm   • opsin binding   • protein binding   • binding   • arrestin family protein binding   • G protein-coupled photoreceptor activity   • molecular transducer activity   • photoreceptor activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • vitamin binding   • retinal binding   • isoprenoid binding   • retinoid binding   • lipid binding   • 11-cis retinal binding   • small molecule binding   • G-protein alpha-subunit binding   • GTPase regulator activity   • enzyme regulator activity   • guanyl-nucleotide exchange factor activity   • nucleoside-triphosphatase regulator activity   • molecular function regulator activity   • cation binding   • transition metal ion binding   • zinc ion binding   • ion binding   • metal ion binding   • identical protein binding   • multicellular organismal process   • rod bipolar cell differentiation   • cellular developmental process   • sensory organ development   • retina development in camera-type eye   • visual system development   • neural retina development   • neurogenesis   • multicellular organism development   • eye morphogenesis   • neuron differentiation   • cell differentiation   • anatomical structure development   • animal organ morphogenesis   • sensory system development   • system development   • developmental process   • camera-type eye morphogenesis   • eye development   • animal organ development   • nervous system development   • retinal bipolar neuron differentiation   • glutamatergic neuron differentiation   • generation of neurons   • retina morphogenesis in camera-type eye   • anatomical structure morphogenesis   • sensory organ morphogenesis   • camera-type eye development   • cellular process   • cellular response to stimulus   • response to light stimulus   • response to stimulus   • cellular response to light stimulus   • response to radiation   • response to abiotic stimulus   • cellular response to radiation   • cellular response to abiotic stimulus   • cellular response to environmental stimulus   • regulation of cellular process   • signaling   • detection of abiotic stimulus   • cell communication   • signal transduction   • detection of light stimulus   • phototransduction   • detection of external stimulus   • regulation of biological process   • biological regulation   • detection of visible light   • response to external stimulus   • detection of stimulus   • G protein-coupled receptor signaling pathway   • G protein-coupled opsin signaling pathway   • phototransduction, visible light   • response to light intensity   • podosome assembly   • organelle assembly   • protein-containing complex organization   • membraneless organelle assembly   • cellular component organization   • cellular component biogenesis   • organelle organization   • cellular component assembly   • protein-containing complex assembly   • cellular component organization or biogenesis   • biosynthetic process   • metabolic process   • macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • multicellular organismal-level homeostasis   • homeostatic process   • anatomical structure homeostasis   • tissue homeostasis   • retina homeostasis   • photoreceptor cell maintenance   • absorption of visible light   • light absorption   • microtubule cytoskeleton organization   • microtubule-based process   • cytoskeleton organization   • sensory perception of light stimulus   • system process   • sensory perception   • nervous system process   • visual perception   • thermoception   • sensory perception of temperature stimulus   • detection of temperature stimulus involved in sensory perception   • response to temperature stimulus   • detection of temperature stimulus involved in thermoception   • detection of temperature stimulus   • detection of stimulus involved in sensory perception   • taxis   • thermotaxis   • locomotion   • cell-cell junction   • anchoring junction   • cell junction   • sperm midpiece   • 9+2 motile cilium   • sperm flagellum   • motile cilium   • photoreceptor inner segment membrane   • Golgi membrane   • Golgi apparatus   • intracellular membrane-bounded organelle   • endomembrane system   • intracellular organelle   • outer membrane   • sperm head   • sperm head plasma membrane   • sperm plasma membrane   • rod photoreceptor outer segment
SCOP2Domain Identifier• G protein-coupled receptor-like
SCOP2Family Identifier• G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeRET
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeRET
NameRETINAL
Synonyms
Identifier
FormulaC20 H28 O
Molecular Weight284.436
SMILES
PubChem638015
Formal Charge0
Total Atoms49
Total Chiral Atoms0
Total Bonds49
Total Aromatic Bonds0

CodeNAG
PDB ResiduesH:H:?1 H:H:?2 H:H:?4
Environment DetailsOpen EMBL-EBI Page
CodeNAG
NameN-Acetylglucosamine
SynonymsN-Acetylglucosamine
Identifier
FormulaC8 H15 N O6
Molecular Weight221.208
SMILES
PubChem24139
Formal Charge0
Total Atoms30
Total Chiral Atoms5
Total Bonds30
Total Aromatic Bonds0

CodeBMA
PDB ResiduesH:H:?3
Environment DetailsOpen EMBL-EBI Page
CodeBMA
Namebeta-D-mannopyranose
Synonymsbeta-D-mannose; D-mannose; mannose
Identifier
FormulaC6 H12 O6
Molecular Weight180.156
SMILES
PubChem439680
Formal Charge0
Total Atoms24
Total Chiral Atoms5
Total Bonds24
Total Aromatic Bonds0

CodePLM
PDB ResiduesH:H:?5
Environment DetailsOpen EMBL-EBI Page
CodePLM
NamePalmitic Acid
SynonymsPalmitinsäure
Identifier
FormulaC16 H32 O2
Molecular Weight256.424
SMILES
PubChem985
Formal Charge0
Total Atoms50
Total Chiral Atoms0
Total Bonds49
Total Aromatic Bonds0

CodeMAN
PDB ResiduesH:H:?6
Environment DetailsOpen EMBL-EBI Page
CodeMAN
Namealpha-D-mannopyranose
Synonymsalpha-D-mannose; D-mannose; mannose
Identifier
FormulaC6 H12 O6
Molecular Weight180.156
SMILES
PubChem185698
Formal Charge0
Total Atoms24
Total Chiral Atoms5
Total Bonds24
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP02699
Sequence
>3PQR_nogp_Chain_R
MNGTEGPNF YVPFSNKTG VVRSPFEAP QYYLAEPWQ FSMLAAYMF 
LLIMLGFPI NFLTLYVTV QHKKLRTPL NYILLNLAV ADLFMVFGG 
FTTTLYTSL HGYFVFGPT GCNLEGFFA TLGGEIALW SLVVLAIER 
YVVVCKPMS NFRFGENHA IMGVAFTWV MALACAAPP LVGWSRYIP 
EGMQCSCGI DYYTPHEET NNESFVIYM FVVHFIIPL IVIFFCYGQ 
LVFTVKEAA AQQQESATT QKAEKEVTR MVIIMVIAF LICWLPYAG 
VAFYIFTHQ GSDFGPIFM TIPAFFAKT SAVYNPVIY IMMNKQFRN 
CMVTTLCCG KN


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8P13ASensoryOpsinRhodopsinBos taurus--Gi1/β1/γT15.22024-11-20To be published
8P13 (No Gprot) ASensoryOpsinRhodopsinBos taurus--5.22024-11-20To be published
8P15ASensoryOpsinRhodopsinBos taurus--Gi1/β1/γT15.92024-11-20To be published
8P15 (No Gprot) ASensoryOpsinRhodopsinBos taurus--5.92024-11-20To be published
6FKDASensoryOpsinsRhodopsinBos taurus-PubChem 137349183-2.492018-04-04doi.org/10.1073/pnas.1718084115
6FKCASensoryOpsinsRhodopsinBos taurus-PubChem 132473039-2.462018-04-04doi.org/10.1073/pnas.1718084115
6FKBASensoryOpsinsRhodopsinBos taurus-PubChem 132473038-3.032018-04-04doi.org/10.1073/pnas.1718084115
6FKAASensoryOpsinsRhodopsinBos taurus-PubChem 132473037-2.72018-04-04doi.org/10.1073/pnas.1718084115
6FK9ASensoryOpsinsRhodopsinBos taurus-PubChem 132473036-2.632018-04-04doi.org/10.1073/pnas.1718084115
6FK8ASensoryOpsinsRhodopsinBos taurus-PubChem 132473035-2.872018-04-04doi.org/10.1073/pnas.1718084115
6FK7ASensoryOpsinsRhodopsinBos taurus-PubChem 132473034-2.622018-04-04doi.org/10.1073/pnas.1718084115
6FK6ASensoryOpsinsRhodopsinBos taurus-PubChem 132473033-2.362018-04-04doi.org/10.1073/pnas.1718084115
6PH7ASensoryOpsinsRhodopsinBos taurus-NerolGt(CT)2.92020-07-01To be published
6PH7 (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Nerol2.92020-07-01To be published
6PGSASensoryOpsinsRhodopsinBos taurus-GeraniolGt(CT)2.92020-07-01To be published
6PGS (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Geraniol2.92020-07-01To be published
6PELASensoryOpsinsRhodopsinBos taurus-CitronellolGt(CT)3.192020-06-24To be published
6PEL (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Citronellol3.192020-06-24To be published
2G87ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.62006-09-02doi.org/10.1002/anie.200600595
4J4QASensoryOpsinsRhodopsinBos taurusOctyl β-D-Glucopyranoside-Gt(CT)2.652013-10-30doi.org/10.1002/anie.201302374
4J4Q (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl β-D-Glucopyranoside-2.652013-10-30doi.org/10.1002/anie.201302374
3OAXASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.62011-01-19doi.org/10.1016/j.bpj.2010.08.003
5W0PASensoryOpsinsRhodopsinHomo sapiens--Arrestin13.012017-08-09doi.org/10.1016/j.cell.2017.07.002
1U19ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.22004-10-12doi.org/10.1016/j.jmb.2004.07.044
1GZMASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.652003-11-20doi.org/10.1016/j.jmb.2004.08.090
2J4YASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.42007-09-25doi.org/10.1016/j.jmb.2007.03.007
3AYMASensoryOpsinsRhodopsinTodarodes pacificusAll-trans-Retinal--2.82011-08-17doi.org/10.1016/j.jmb.2011.08.044
3AYNASensoryOpsinsRhodopsinTodarodes pacificus9-cis-Retinal--2.72011-08-17doi.org/10.1016/j.jmb.2011.08.044
6OY9ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt/β1/γ13.92019-07-24doi.org/10.1016/j.molcel.2019.06.007
6OY9 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.92019-07-24doi.org/10.1016/j.molcel.2019.06.007
6OYAASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt/β1/γ13.32019-07-24doi.org/10.1016/j.molcel.2019.06.007
6OYA (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.32019-07-24doi.org/10.1016/j.molcel.2019.06.007
4X1HASensoryOpsinsRhodopsinBos taurusNonyl-β-D-Glucopyranoside-Gt(CT)2.292015-11-04doi.org/10.1016/j.str.2015.09.015
4X1H (No Gprot) ASensoryOpsinsRhodopsinBos taurusNonyl-β-D-Glucopyranoside-2.292015-11-04doi.org/10.1016/j.str.2015.09.015
1HZXASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.82001-07-04doi.org/10.1021/bi0155091
4BEZASensoryOpsinsRhodopsinBos taurus---3.32013-04-24doi.org/10.1038/embor.2013.44
4BEYASensoryOpsinsRhodopsinBos taurus--Gt(CT)2.92013-05-08doi.org/10.1038/embor.2013.44
4BEY (No Gprot) ASensoryOpsinsRhodopsinBos taurus--2.92013-05-08doi.org/10.1038/embor.2013.44
2Z73ASensoryOpsinsRhodopsinTodarodes pacificus11-cis-Retinal--2.52008-05-13doi.org/10.1038/nature06925
3CAPASensoryOpsinsRhodopsinBos taurus---2.92008-06-24doi.org/10.1038/nature07063
3DQBASensoryOpsinsRhodopsinBos taurus--Gt(CT)3.22008-09-23doi.org/10.1038/nature07330
3DQB (No Gprot) ASensoryOpsinsRhodopsinBos taurus--3.22008-09-23doi.org/10.1038/nature07330
3PQRASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)2.852011-03-09doi.org/10.1038/nature09789
3PQR (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-2.852011-03-09doi.org/10.1038/nature09789
3PXOASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--32011-03-09doi.org/10.1038/nature09789
2X72ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)32011-03-16doi.org/10.1038/nature09795
2X72 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-32011-03-16doi.org/10.1038/nature09795
4ZWJASensoryOpsinsRhodopsinHomo sapiens--Arrestin13.32015-07-29doi.org/10.1038/nature14656
4PXFASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Arrestin1 Finger Loop2.752014-09-17doi.org/10.1038/ncomms5801
5WKTASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Gt(CT)3.22017-12-13doi.org/10.1038/nprot.2017.135
5WKT (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-3.22017-12-13doi.org/10.1038/nprot.2017.135
8FCZASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.72023-08-30doi.org/10.1038/s41467-023-40911-9
8FD0ASensoryOpsinsRhodopsinBos taurus---3.712023-08-30doi.org/10.1038/s41467-023-40911-9
8FD1ASensoryOpsinsRhodopsinBos taurus---4.252023-08-30doi.org/10.1038/s41467-023-40911-9
9EPPASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-chim(Gi1-CtGq)/β1/γ24.062024-10-23doi.org/10.1038/s41467-024-53208-2
9EPP (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-4.062024-10-23doi.org/10.1038/s41467-024-53208-2
9EPQASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-chim(Gi1-CtGq)/β1/γ24.152024-10-23doi.org/10.1038/s41467-024-53208-2
9EPQ (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-4.152024-10-23doi.org/10.1038/s41467-024-53208-2
6CMOASensoryOpsinsRhodopsinHomo sapiens--Gi1/β1/γ24.52018-06-20doi.org/10.1038/s41586-018-0215-y
6CMO (No Gprot) ASensoryOpsinsRhodopsinHomo sapiens--4.52018-06-20doi.org/10.1038/s41586-018-0215-y
7MT8ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK15.82021-07-07doi.org/10.1038/s41586-021-03721-x
7MT9ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK172021-07-07doi.org/10.1038/s41586-021-03721-x
7MTAASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK14.12021-07-07doi.org/10.1038/s41586-021-03721-x
7MTBASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK142021-07-07doi.org/10.1038/s41586-021-03721-x
7ZBCASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
7ZBEASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
8A6CASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
8A6DASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
8A6EASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-29doi.org/10.1038/s41586-023-05863-6
5DGYASensoryOpsinsRhodopsinHomo sapiens--Arrestin17.72016-03-23doi.org/10.1038/sdata.2016.21
2HPYASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.82006-08-22doi.org/10.1073/pnas.0601765103
2I35ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.82006-10-17doi.org/10.1073/pnas.0608022103
2I36ASensoryOpsinsRhodopsinBos taurus---4.12006-10-17doi.org/10.1073/pnas.0608022103
2I37ASensoryOpsinsRhodopsinBos taurus---4.152006-10-17doi.org/10.1073/pnas.0608022103
1L9HASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.62002-05-15doi.org/10.1073/pnas.082666399
4A4MASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)3.32012-01-25doi.org/10.1073/pnas.1114089108
4A4M (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.32012-01-25doi.org/10.1073/pnas.1114089108
5TE3ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside--2.72017-03-15doi.org/10.1073/pnas.1617446114
5TE5ASensoryOpsinsRhodopsinBos taurus20-Methanoretinal--4.012017-03-15doi.org/10.1073/pnas.1617446114
6I9KASensoryOpsinsRhodopsinHasarius adansoni9-cis-Retinal--2.152019-07-03doi.org/10.1073/pnas.1902192116
2ZIYASensoryOpsinsRhodopsinTodarodes pacificus11-cis-Retinal--3.72008-05-06doi.org/10.1074/jbc.C800040200
6OFJASensoryOpsinsRhodopsinBos taurus---4.52019-08-21doi.org/10.1074/jbc.RA119.010089
3C9LASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.652008-08-05doi.org/10.1107/S0907444908017162
3C9MASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.42008-08-05doi.org/10.1107/S0907444908017162
6FUFASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Go3.122018-10-03doi.org/10.1126/sciadv.aat7052
6FUF (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.122018-10-03doi.org/10.1126/sciadv.aat7052
1F88ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.82000-08-04doi.org/10.1126/science.289.5480.739
4WW3ASensoryOpsinsRhodopsinTodarodes pacificusAll-trans-Retinal--2.82015-06-17doi.org/10.1371/journal.pone.0126970
5DYSASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.32016-08-10doi.org/10.15252/embr.201642671
5EN0ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)2.812016-08-10doi.org/10.15252/embr.201642671
5EN0 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-2.812016-08-10doi.org/10.15252/embr.201642671
2PEDASensoryOpsinsRhodopsinBos taurus9-cis-Retinal--2.952007-10-30doi.org/10.1529/biophysj.107.108225
6QNOASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gi1/β1/γ14.382019-07-10doi.org/10.7554/eLife.46041
6QNO (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-4.382019-07-10doi.org/10.7554/eLife.46041
9EPRASensoryOpsinsRhodopsinHasarius adansoniRetinal-Gi1/β1/γ24.92024-10-30doi.org/10.1038/s41467-024-53208-2
9EPR (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoniRetinal-4.92024-10-30doi.org/10.1038/s41467-024-53208-2
6NWEASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Gt(CT)2.712020-02-12To be published
6NWE (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-2.712020-02-12To be published
8P12ASensoryOpsinsRhodopsinBos taurus--Gi1/β1/γT13.212024-11-20To be published
8P12 (No Gprot) ASensoryOpsinsRhodopsinBos taurus--3.212024-11-20To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 3PQR_nogp.zip



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