Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:V11 4.25333618
2R:R:V20 8.574516
3R:R:S22 5.055415
4R:R:P23 7.20667615
5R:R:F24 6.14333615
6R:R:Q28 6.642515
7R:R:Y29 6.8975404
8R:R:Y30 6.8714
9R:R:Q36 6.455442
10R:R:Y43 7.3625424
11R:R:N55 6.5375409
12R:R:H65 7.42455
13R:R:I75 5.1775437
14R:R:N78 6.564539
15R:R:F91 7.4425407
16R:R:F103 5.3618
17R:R:C110 4.8575419
18R:R:I123 4.426537
19R:R:W126 9.148505
20R:R:Y136 7.064567
21R:R:F148 6.03507
22R:R:W161 5.8825439
23R:R:P170 4.7417
24R:R:W175 10.266515
25R:R:R177 13.87415
26R:R:Y178 8.025403
27R:R:I179 7.0125411
28R:R:P180 5.365613
29R:R:Q184 5.676513
30R:R:D190 9.342514
31R:R:Y191 7.972516
32R:R:Y192 8.962515
33R:R:H195 16.0125414
34R:R:N200 5.9475414
35R:R:F203 9.80667616
36R:R:Y206 7.3275414
37R:R:M207 6.0775415
38R:R:H211 7.58167616
39R:R:F212 7.88418
40R:R:Y223 7.485409
41R:R:E247 4.99577
42R:R:F261 5.504529
43R:R:Y268 5.8175416
44R:R:F283 8.4075414
45R:R:Y301 4.69425
46R:R:Y306 8.05509
47R:R:F313 8.5825408
48W:W:?3 6.6575810
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:I179 R:R:P180 94.71763.39YesYes113
2R:R:P180 R:R:P23 21.17125.84YesYes135
3R:R:P23 R:R:V11 10.41433.53YesYes158
4R:R:P180 R:R:Q184 19.11636.32YesYes133
5R:R:F24 R:R:P180 25.37177.22YesYes153
6R:R:V11 R:R:Y30 11.47425.05YesYes184
7R:R:Q28 R:R:Y30 11.461212.4YesYes154
8R:R:V19 R:R:Y30 11.51833.79NoYes034
9R:R:F103 R:R:F24 23.54515.36YesYes185
10R:R:C110 R:R:F103 21.94824.19YesYes198
11R:R:C110 R:R:P180 22.50993.77YesYes193
12R:R:C187 R:R:F103 21.95476.98NoYes198
13R:R:C187 R:R:P180 22.52425.65NoYes193
14R:R:F103 R:R:F105 52.77616.43YesNo087
15R:R:F105 R:R:V104 47.1857.87NoNo074
16R:R:V104 R:R:Y102 43.500811.36NoNo044
17R:R:P27 R:R:Y102 41.63796.95NoNo084
18R:R:P27 R:R:Y29 39.77256.95NoYes084
19R:R:F37 R:R:Y29 34.16055.16NoYes054
20R:R:A32 R:R:F37 13.38384.16NoNo035
21R:R:A32 R:R:Q36 11.47944.55NoYes032
22R:R:F37 R:R:M183 19.08136.22NoNo052
23R:R:L40 R:R:M183 17.18477.07NoNo052
24R:R:C185 R:R:L40 11.47943.17NoNo055
25R:R:Y191 R:R:Y192 90.526216.88YesYes165
26R:R:Y191 W:W:?3 90.00865.64YesYes160
27R:R:E122 W:W:?3 46.79325.1NoYes160
28R:R:E122 R:R:H211 46.41053.69NoYes166
29R:R:H211 R:R:W126 1009.52YesYes065
30R:R:L125 R:R:W126 96.21725.69NoYes075
31R:R:L125 R:R:W265 22.720114.81NoNo278
32R:R:C264 R:R:W265 22.391911.75NoNo288
33R:R:C264 R:R:Y301 20.65744.03NoYes285
34R:R:T297 R:R:Y301 23.58534.99NoYes265
35R:R:L47 R:R:T297 13.40714.42NoNo276
36R:R:M207 W:W:?3 47.5786.8YesYes150
37R:R:H211 R:R:M207 53.86193.94YesYes165
38R:R:F91 R:R:L47 12.888212.18YesNo077
39R:R:F261 R:R:L125 73.06264.87YesNo297
40R:R:F261 R:R:L128 70.27093.65YesNo098
41R:R:L128 R:R:Y306 69.807714.07NoYes089
42R:R:L79 R:R:Y306 29.47753.52NoYes099
43R:R:D83 R:R:L79 28.74714.07NoNo099
44R:R:D83 R:R:N55 27.278612.12NoYes099
45R:R:A80 R:R:N55 22.81093.13NoYes099
46R:R:A80 R:R:T58 18.24973.36NoNo099
47R:R:I307 R:R:T58 17.480510.64NoNo079
48R:R:F313 R:R:I307 15.934211.3YesNo087
49R:R:E134 R:R:F148 11.267912.83NoYes087
50R:R:E134 R:R:I75 12.0194.1NoYes387
51R:R:I75 R:R:L131 23.60094.28YesNo079
52R:R:L131 R:R:R135 24.349417.01NoNo099
53R:R:R135 R:R:Y223 25.09536.17NoYes099
54R:R:M257 R:R:Y223 45.484311.97NoYes089
55R:R:M257 R:R:Y306 48.796211.97NoYes089
56R:R:V254 R:R:Y223 15.19343.79NoYes089
57R:R:V227 R:R:V254 14.41124.81NoNo058
58R:R:K231 R:R:V227 13.62894.55NoNo055
59R:R:E247 R:R:K231 12.037210.8YesNo775
60R:R:I179 R:R:Y192 85.54734.84YesYes115
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:C167 R:R:E122 9.12 1 No No 5 6 2 1
R:R:E122 R:R:H211 3.69 1 No Yes 6 6 1 2
R:R:E122 W:W:?3 5.1 1 No Yes 6 0 1 0
R:R:C167 R:R:M207 4.86 1 No Yes 5 5 2 1
R:R:C167 R:R:H211 8.85 1 No Yes 5 6 2 2
R:R:Y191 R:R:Y192 16.88 1 Yes Yes 6 5 1 2
R:R:Y191 R:R:Y268 5.96 1 Yes Yes 6 6 1 1
R:R:A272 R:R:Y191 5.34 1 No Yes 5 6 1 1
R:R:I275 R:R:Y191 6.04 1 No Yes 4 6 2 1
R:R:Y191 W:W:?3 5.64 1 Yes Yes 6 0 1 0
R:R:F203 R:R:M207 8.71 1 Yes Yes 6 5 2 1
R:R:H211 R:R:M207 3.94 1 Yes Yes 6 5 2 1
R:R:M207 W:W:?3 6.8 1 Yes Yes 5 0 1 0
R:R:F208 R:R:F212 5.36 1 No Yes 5 8 1 1
R:R:F208 R:R:I213 7.54 1 No No 5 4 1 2
R:R:F208 W:W:?3 3.52 1 No Yes 5 0 1 0
R:R:F212 R:R:I213 3.77 1 Yes No 8 4 1 2
R:R:A269 R:R:F212 8.32 1 No Yes 7 8 1 1
R:R:F212 W:W:?3 14.07 1 Yes Yes 8 0 1 0
R:R:P291 R:R:Y268 6.95 0 No Yes 6 6 2 1
R:R:Y268 W:W:?3 9.03 1 Yes Yes 6 0 1 0
R:R:A269 W:W:?3 4.55 1 No Yes 7 0 1 0
R:R:A272 W:W:?3 4.55 1 No Yes 5 0 1 0
R:R:A269 R:R:G270 1.95 1 No No 7 5 1 2
R:R:A295 R:R:Y268 1.33 0 No Yes 8 6 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 6PGS_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.39
Number of Linked Nodes 311
Number of Links 357
Number of Hubs 48
Number of Links mediated by Hubs 183
Number of Communities 7
Number of Nodes involved in Communities 80
Number of Links involved in Communities 121
Path Summary
Number Of Nodes in MetaPath 61
Number Of Links MetaPath 60
Number of Shortest Paths 118373
Length Of Smallest Path 3
Average Path Length 18.503
Length of Longest Path 40
Minimum Path Strength 1.455
Average Path Strength 7.00071
Maximum Path Strength 24
Minimum Path Correlation 0.7
Average Path Correlation 0.936755
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.57143
Average % Of Corr. Nodes 47.7464
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 52.0419
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• opsin binding   • protein binding   • binding   • arrestin family protein binding   • G protein-coupled photoreceptor activity   • molecular transducer activity   • photoreceptor activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • vitamin binding   • retinal binding   • isoprenoid binding   • retinoid binding   • lipid binding   • 11-cis retinal binding   • small molecule binding   • G-protein alpha-subunit binding   • enzyme regulator activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • hydrolase activity   • guanyl ribonucleotide binding   • GDP binding   • purine ribonucleotide binding   • ion binding   • ribonucleoside triphosphate phosphatase activity   • anion binding   • molecular function regulator activity   • heterocyclic compound binding   • carbohydrate derivative binding   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • ribonucleotide binding   • pyrophosphatase activity   • GTPase activity   • nucleoside-triphosphatase regulator activity   • GTPase regulator activity   • purine ribonucleoside triphosphate binding   • guanyl-nucleotide exchange factor activity   • nucleoside phosphate binding   • purine nucleotide binding   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • cation binding   • transition metal ion binding   • zinc ion binding   • metal ion binding   • identical protein binding   • multicellular organismal process   • rod bipolar cell differentiation   • cellular developmental process   • sensory organ development   • retina development in camera-type eye   • visual system development   • neural retina development   • neurogenesis   • multicellular organism development   • eye morphogenesis   • neuron differentiation   • cell differentiation   • anatomical structure development   • animal organ morphogenesis
Gene OntologyBiological Process• multicellular organismal process   • rod bipolar cell differentiation   • cellular developmental process   • sensory organ development   • retina development in camera-type eye   • visual system development   • neural retina development   • neurogenesis   • multicellular organism development   • eye morphogenesis   • neuron differentiation   • cell differentiation   • anatomical structure development   • animal organ morphogenesis   • sensory system development   • system development   • developmental process   • camera-type eye morphogenesis   • eye development   • animal organ development   • nervous system development   • retinal bipolar neuron differentiation   • glutamatergic neuron differentiation   • generation of neurons   • retina morphogenesis in camera-type eye   • anatomical structure morphogenesis   • sensory organ morphogenesis   • camera-type eye development   • cellular process   • cellular response to stimulus   • response to light stimulus   • response to stimulus   • cellular response to light stimulus   • response to radiation   • response to abiotic stimulus   • cellular response to radiation   • cellular response to abiotic stimulus   • cellular response to environmental stimulus   • regulation of cellular process   • signaling   • detection of abiotic stimulus   • cell communication   • signal transduction   • detection of light stimulus   • phototransduction   • detection of external stimulus   • regulation of biological process   • biological regulation   • detection of visible light   • response to external stimulus   • detection of stimulus   • G protein-coupled receptor signaling pathway   • G protein-coupled opsin signaling pathway   • phototransduction, visible light   • response to light intensity   • podosome assembly   • organelle assembly   • protein-containing complex organization   • membraneless organelle assembly   • cellular component organization   • cellular component biogenesis   • organelle organization   • cellular component assembly   • protein-containing complex assembly   • cellular component organization or biogenesis   • biosynthetic process   • metabolic process   • macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • multicellular organismal-level homeostasis   • homeostatic process   • anatomical structure homeostasis   • tissue homeostasis   • retina homeostasis   • photoreceptor cell maintenance   • absorption of visible light   • light absorption   • microtubule cytoskeleton organization   • microtubule-based process   • cytoskeleton organization   • sensory perception of light stimulus   • system process   • sensory perception   • nervous system process   • visual perception   • thermoception   • sensory perception of temperature stimulus   • detection of temperature stimulus involved in sensory perception   • response to temperature stimulus   • detection of temperature stimulus involved in thermoception   • detection of temperature stimulus   • detection of stimulus involved in sensory perception   • taxis   • thermotaxis   • locomotion   • cellular anatomical structure   • membrane   • cell-cell junction   • anchoring junction   • cell junction   • membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection
Gene OntologyCellular Component• cellular anatomical structure   • membrane   • cell-cell junction   • anchoring junction   • cell junction   • membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle   • organelle membrane   • cell periphery   • protein-containing complex   • plasma membrane protein complex   • plasma membrane   • plasma membrane signaling receptor complex   • G protein-coupled receptor complex   • membrane protein complex   • receptor complex   • sperm midpiece   • 9+2 motile cilium   • sperm flagellum   • motile cilium   • photoreceptor inner segment membrane   • plasma membrane region   • photoreceptor inner segment   • ciliary membrane   • photoreceptor outer segment membrane   • bounding membrane of organelle   • cell projection membrane   • Golgi membrane   • intracellular anatomical structure   • Golgi apparatus   • intracellular membrane-bounded organelle   • endomembrane system   • intracellular organelle   • cytoplasm   • outer membrane   • sperm head   • sperm head plasma membrane   • sperm plasma membrane   • rod photoreceptor outer segment   • binding   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • protein binding   • signaling receptor binding   • G protein-coupled receptor binding   • cation binding   • metal ion binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • multicellular organismal process   • multicellular organismal-level homeostasis   • homeostatic process   • homeostasis of number of cells within a tissue   • anatomical structure homeostasis   • tissue homeostasis   • homeostasis of number of cells   • retina homeostasis   • homeostasis of number of retina cells   • detection of light stimulus involved in visual perception   • detection of light stimulus   • response to light stimulus   • detection of external stimulus   • sensory perception of light stimulus   • system process   • nervous system process   • response to stimulus   • response to external stimulus   • detection of abiotic stimulus   • detection of stimulus   • sensory perception   • detection of light stimulus involved in sensory perception   • response to abiotic stimulus   • response to radiation   • visual perception   • detection of stimulus involved in sensory perception   • protein localization   • localization   • cellular localization   • cellular macromolecule localization   • macromolecule localization   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • signaling   • biological regulation   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • signal transduction   • behavior   • visual behavior   • tissue remodeling   • developmental process   • tissue regeneration   • developmental growth   • neural tissue regeneration   • anatomical structure development   • growth   • regeneration   • detection of chemical stimulus involved in sensory perception of bitter taste   • detection of chemical stimulus involved in sensory perception of taste   • sensory perception of chemical stimulus   • sensory perception of taste   • response to chemical   • detection of chemical stimulus   • sensory perception of bitter taste   • detection of chemical stimulus involved in sensory perception   • amine metabolic process   • catecholamine metabolic process   • phenol-containing compound metabolic process   • dopamine metabolic process   • metabolic process   • catechol-containing compound metabolic process   • biogenic amine metabolic process   • pigmentation   • response to light intensity   • background adaptation   • regulation of pigmentation   • biosynthetic process   • macromolecule metabolic process   • gene expression   • macromolecule biosynthetic process   • anatomical structure morphogenesis   • cell morphogenesis   • response to UV   • cellular developmental process   • sensory organ development   • photoreceptor cell differentiation   • visual system development   • retina development in camera-type eye   • neural retina development   • eye morphogenesis   • multicellular organism development   • neurogenesis   • neuron differentiation   • cell differentiation   • eye photoreceptor cell differentiation   • animal organ morphogenesis   • sensory system development   • system development   • camera-type eye morphogenesis   • eye development   • animal organ development   • nervous system development   • camera-type eye photoreceptor cell differentiation   • generation of neurons   • retina morphogenesis in camera-type eye   • sensory organ morphogenesis   • camera-type eye development   • retinal rod cell differentiation   • cone retinal bipolar cell differentiation   • retinal bipolar neuron differentiation   • glutamatergic neuron differentiation   • phototransduction   • organic anion transport   • nitrogen compound transport   • carboxylic acid transport   • transport   • L-amino acid transport   • establishment of localization   • L-glutamate import   • organic acid transport   • amino acid transport   • acidic amino acid transport   • dicarboxylic acid transport   • cell development   • retinal cone cell differentiation   • photoreceptor cell development   • eye photoreceptor cell development   • retinal cone cell development   • neuron development   • defense response   • response to stress   • reactive gliosis   • inflammatory response   • neuroinflammatory response   • extrinsic component of plasma membrane   • catalytic complex   • cytoplasmic side of membrane   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • synapse
SCOP2Domain Identifier• G protein-coupled receptor-like
SCOP2Family Identifier• G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
Code64Z
PDB ResiduesW:W:?3
Environment DetailsOpen EMBL-EBI Page
Code64Z
NameGeraniol
Synonymsgeranyl alcohol
Identifier
FormulaC10 H18 O
Molecular Weight154.249
SMILES
PubChem637566
Formal Charge0
Total Atoms29
Total Chiral Atoms0
Total Bonds28
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP02699
Sequence
>6PGS_nogp_Chain_R
MNGTEGPNF YVPFSNKTG VVRSPFEAP QYYLAEPWQ FSMLAAYMF 
LLIMLGFPI NFLTLYVTV QHKKLRTPL NYILLNLAV ADLFMVFGG 
FTTTLYTSL HGYFVFGPT GCNLEGFFA TLGGEIALW SLVVLAIER 
YVVVCKPMS NFRFGENHA IMGVAFTWV MALACAAPP LVGWSRYIP 
EGMQCSCGI DYYTPHEET NNESFVIYM FVVHFIIPL IVIFFCYGQ 
LVFTVKEAA AQQQESATT QKAEKEVTR MVIIMVIAF LICWLPYAG 
VAFYIFTHQ GSDFGPIFM TIPAFFAKT SAVYNPVIY IMMNKQFRN 
CMVTTLCCG KN


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8P15ASensoryOpsinRhodopsinBos taurus--Gi1/β1/γT15.92024-11-20To be published
8P15 (No Gprot) ASensoryOpsinRhodopsinBos taurus--5.92024-11-20To be published
8P13ASensoryOpsinRhodopsinBos taurus--Gi1/β1/γT15.22024-11-20To be published
8P13 (No Gprot) ASensoryOpsinRhodopsinBos taurus--5.22024-11-20To be published
8P12ASensoryOpsinsRhodopsinBos taurus--Gi1/β1/γT13.212024-11-20To be published
8P12 (No Gprot) ASensoryOpsinsRhodopsinBos taurus--3.212024-11-20To be published
9EPRASensoryOpsinsRhodopsinHasarius adansoniRetinal-Gi1/β1/γ24.92024-10-30doi.org/10.1038/s41467-024-53208-2
9EPR (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoniRetinal-4.92024-10-30doi.org/10.1038/s41467-024-53208-2
9EPQASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-chim(Gi1-CtGq)/β1/γ24.152024-10-2310.1038/s41467-024-53208-2
9EPQ (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-4.152024-10-2310.1038/s41467-024-53208-2
9EPPASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-chim(Gi1-CtGq)/β1/γ24.062024-10-2310.1038/s41467-024-53208-2
9EPP (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-4.062024-10-2310.1038/s41467-024-53208-2
8FD1ASensoryOpsinsRhodopsinBos taurus---4.252023-08-3010.1038/s41467-023-40911-9
8FD1 (Multimeric) ASensoryOpsinsRhodopsinBos taurus--4.252023-08-3010.1038/s41467-023-40911-9
8FD0ASensoryOpsinsRhodopsinBos taurus---3.712023-08-3010.1038/s41467-023-40911-9
8FD0 (Multimeric) ASensoryOpsinsRhodopsinBos taurus--3.712023-08-3010.1038/s41467-023-40911-9
8FCZASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.72023-08-3010.1038/s41467-023-40911-9
8FCZ (Multimeric) ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal-3.72023-08-3010.1038/s41467-023-40911-9
8A6EASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
8A6DASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
8A6CASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
7ZBEASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
7ZBCASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
7MTBASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK142021-07-0710.1038/s41586-021-03721-x
7MTB (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-42021-07-0710.1038/s41586-021-03721-x
7MTAASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK14.12021-07-0710.1038/s41586-021-03721-x
7MTA (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-4.12021-07-0710.1038/s41586-021-03721-x
7MT9ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK172021-07-0710.1038/s41586-021-03721-x
7MT9 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-72021-07-0710.1038/s41586-021-03721-x
7MT8ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK15.82021-07-0710.1038/s41586-021-03721-x
7MT8 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-5.82021-07-0710.1038/s41586-021-03721-x
6PH7ASensoryOpsinsRhodopsinBos taurus-NerolGt(CT)2.92020-07-01To be published
6PH7 (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Nerol2.92020-07-01To be published
6PGSASensoryOpsinsRhodopsinBos taurus-GeraniolGt(CT)2.92020-07-01To be published
6PGS (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Geraniol2.92020-07-01To be published
6PELASensoryOpsinsRhodopsinBos taurus-CitronellolGt(CT)3.192020-06-24To be published
6PEL (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Citronellol3.192020-06-24To be published
6NWEASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Gt(CT)2.712020-02-12To be published
6NWE (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-2.712020-02-12To be published
6OFJASensoryOpsinsRhodopsinBos taurus---4.52019-08-2110.1074/jbc.RA119.010089
6OFJ (Multimeric) ASensoryOpsinsRhodopsinBos taurus--4.52019-08-2110.1074/jbc.RA119.010089
6OYAASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt/β1/γ13.32019-07-2410.1016/j.molcel.2019.06.007
6OYA (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.32019-07-2410.1016/j.molcel.2019.06.007
6OY9ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt/β1/γ13.92019-07-2410.1016/j.molcel.2019.06.007
6OY9 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.92019-07-2410.1016/j.molcel.2019.06.007
6QNOASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gi1/β1/γ14.382019-07-1010.7554/eLife.46041
6QNO (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-4.382019-07-1010.7554/eLife.46041
6I9KASensoryOpsinsRhodopsinHasarius adansoni9-cis-Retinal--2.152019-07-0310.1073/pnas.1902192116
6FUFASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Go3.122018-10-0310.1126/sciadv.aat7052
6FUF (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.122018-10-0310.1126/sciadv.aat7052
6CMOASensoryOpsinsRhodopsinHomo sapiens--Gi1/β1/γ24.52018-06-2010.1038/s41586-018-0215-y
6CMO (No Gprot) ASensoryOpsinsRhodopsinHomo sapiens--4.52018-06-2010.1038/s41586-018-0215-y
6FKDASensoryOpsinsRhodopsinBos taurus-PubChem 137349183-2.492018-04-0410.1073/pnas.1718084115
6FKCASensoryOpsinsRhodopsinBos taurus-PubChem 132473039-2.462018-04-0410.1073/pnas.1718084115
6FKBASensoryOpsinsRhodopsinBos taurus-PubChem 132473038-3.032018-04-0410.1073/pnas.1718084115
6FKAASensoryOpsinsRhodopsinBos taurus-PubChem 132473037-2.72018-04-0410.1073/pnas.1718084115
6FK9ASensoryOpsinsRhodopsinBos taurus-PubChem 132473036-2.632018-04-0410.1073/pnas.1718084115
6FK8ASensoryOpsinsRhodopsinBos taurus-PubChem 132473035-2.872018-04-0410.1073/pnas.1718084115
6FK7ASensoryOpsinsRhodopsinBos taurus-PubChem 132473034-2.622018-04-0410.1073/pnas.1718084115
6FK6ASensoryOpsinsRhodopsinBos taurus-PubChem 132473033-2.362018-04-0410.1073/pnas.1718084115
5WKTASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Gt(CT)3.22017-12-1310.1038/nprot.2017.135
5WKT (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-3.22017-12-1310.1038/nprot.2017.135
5W0PASensoryOpsinsRhodopsinHomo sapiens--Arrestin13.012017-08-0910.1016/j.cell.2017.07.002
5TE5ASensoryOpsinsRhodopsinBos taurus20-Methanoretinal--4.012017-03-1510.1073/pnas.1617446114
5TE3ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside--2.72017-03-1510.1073/pnas.1617446114
5DYSASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.32016-08-1010.15252/embr.201642671
5EN0ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)2.812016-08-1010.15252/embr.201642671
5EN0 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-2.812016-08-1010.15252/embr.201642671
5DGYASensoryOpsinsRhodopsinHomo sapiens--Arrestin17.72016-03-2310.1038/sdata.2016.21
4X1HASensoryOpsinsRhodopsinBos taurusNonyl-β-D-Glucopyranoside-Gt(CT)2.292015-11-0410.1016/j.str.2015.09.015
4X1H (No Gprot) ASensoryOpsinsRhodopsinBos taurusNonyl-β-D-Glucopyranoside-2.292015-11-0410.1016/j.str.2015.09.015
4ZWJASensoryOpsinsRhodopsinHomo sapiens--Arrestin13.32015-07-2910.1038/nature14656
4WW3ASensoryOpsinsRhodopsinTodarodes pacificusAll-trans-Retinal--2.82015-06-1710.1371/journal.pone.0126970
4PXFASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Arrestin1 Finger Loop2.752014-09-1710.1038/ncomms5801
4J4QASensoryOpsinsRhodopsinBos taurusOctyl β-D-Glucopyranoside-Gt(CT)2.652013-10-3010.1002/anie.201302374
4J4Q (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl β-D-Glucopyranoside-2.652013-10-3010.1002/anie.201302374
4BEYASensoryOpsinsRhodopsinBos taurus--Gt(CT)2.92013-05-0810.1038/embor.2013.44
4BEY (No Gprot) ASensoryOpsinsRhodopsinBos taurus--2.92013-05-0810.1038/embor.2013.44
4BEZASensoryOpsinsRhodopsinBos taurus---3.32013-04-2410.1038/embor.2013.44
4A4MASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)3.32012-01-2510.1073/pnas.1114089108
4A4M (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.32012-01-2510.1073/pnas.1114089108
3AYNASensoryOpsinsRhodopsinTodarodes pacificus9-cis-Retinal--2.72011-08-1710.1016/j.jmb.2011.08.044
3AYMASensoryOpsinsRhodopsinTodarodes pacificusAll-trans-Retinal--2.82011-08-1710.1016/j.jmb.2011.08.044
2X72ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)32011-03-1610.1038/nature09795
2X72 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-32011-03-1610.1038/nature09795
3PXOASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--32011-03-0910.1038/nature09789
3PQRASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)2.852011-03-0910.1038/nature09789
3PQR (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-2.852011-03-0910.1038/nature09789
3OAXASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.62011-01-1910.1016/j.bpj.2010.08.003
3DQBASensoryOpsinsRhodopsinBos taurus--Gt(CT)3.22008-09-2310.1038/nature07330
3DQB (No Gprot) ASensoryOpsinsRhodopsinBos taurus--3.22008-09-2310.1038/nature07330
3C9MASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.42008-08-0510.1107/S0907444908017162
3C9LASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.652008-08-0510.1107/S0907444908017162
3CAPASensoryOpsinsRhodopsinBos taurus---2.92008-06-2410.1038/nature07063
3CAP (Multimeric) ASensoryOpsinsRhodopsinBos taurus--2.92008-06-2410.1038/nature07063
2Z73ASensoryOpsinsRhodopsinTodarodes pacificus11-cis-Retinal--2.52008-05-1310.1038/nature06925
2ZIYASensoryOpsinsRhodopsinTodarodes pacificus11-cis-Retinal--3.72008-05-0610.1074/jbc.C800040200
2PEDASensoryOpsinsRhodopsinBos taurus9-cis-Retinal--2.952007-10-3010.1529/biophysj.107.108225
2J4YASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.42007-09-2510.1016/j.jmb.2007.03.007
2I37ASensoryOpsinsRhodopsinBos taurus---4.152006-10-1710.1073/pnas.0608022103
2I36ASensoryOpsinsRhodopsinBos taurus---4.12006-10-1710.1073/pnas.0608022103
2I35ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.82006-10-1710.1073/pnas.0608022103
2G87ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.62006-09-0210.1002/anie.200600595
2HPYASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.82006-08-2210.1073/pnas.0601765103
1U19ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.22004-10-1210.1016/j.jmb.2004.07.044
1GZMASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.652003-11-2010.1016/j.jmb.2004.08.090
1L9HASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.62002-05-1510.1073/pnas.082666399
1HZXASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.82001-07-0410.1021/bi0155091
1F88ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.82000-08-0410.1126/science.289.5480.739




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 6PGS_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.