Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1H:H:?1 15.916510
2R:R:F9 7.935417
3R:R:Y10 5.522515
4R:R:V11 4.15415
5R:R:P12 3.444516
6R:R:N15 11.0375417
7R:R:V20 7.45515
8R:R:S22 5.415417
9R:R:P23 7.554515
10R:R:F24 8.7175415
11R:R:Y29 5.94254144
12R:R:Y30 6.42667614
13R:R:L31 3.874514
14R:R:W35 7.74402
15R:R:Y43 9.04484
16R:R:M44 5.206587
17R:R:N55 6.54254159
18R:R:L68 6.0075408
19R:R:I75 6.215427
20R:R:N78 6.502529
21R:R:F91 5.03167687
22R:R:F103 6.312518
23R:R:T118 4.9425405
24R:R:E122 8.574526
25R:R:I123 5.12833627
26R:R:W126 8.36667626
27R:R:S127 4.2427
28R:R:V129 5.3325427
29R:R:L131 6.85529
30R:R:R135 7.165429
31R:R:P142 4.9975437
32R:R:F148 6.28406
33R:R:T160 3.5675426
34R:R:W175 7.334504
35R:R:Y178 7.748505
36R:R:I179 7.615413
37R:R:P180 5.236511
38R:R:E181 3.905413
39R:R:D190 9.9514
40R:R:Y191 4.60833615
41R:R:Y192 6.22714714
42R:R:T193 7.5575413
43R:R:K195 6.1025414
44R:R:N200 6.7125415
45R:R:F203 7.3765166
46R:R:H211 8.90667626
47R:R:P215 7.2325428
48R:R:F220 4.64104
49R:R:Y223 4.34667629
50R:R:Y257 11.3325428
51R:R:Y268 4.8525416
52R:R:F283 7.724122
53R:R:P285 3.582514
54R:R:M288 5.0025414
55R:R:P291 5.3275407
56R:R:K296 5.3487
57R:R:Y301 5.29754115
58R:R:Y306 12.48409
59R:R:Q312 6.685407
60R:R:F313 5.92628
61R:R:?336 6.322506
62R:R:?338 7.482598
63V:V:R19 4.83254185
64V:V:D20 4.7625408
65V:V:S22 5.3525405
66V:V:Y26 9.01408
67V:V:L27 3.17478
68V:V:R30 7.3275499
69V:V:Y32 5.83577
70V:V:V42 5.8775477
71V:V:V53 3.995404
72V:V:V58 4.87407
73V:V:Y59 8.862544
74V:V:T61 4.75546
75V:V:T63 3.5775447
76V:V:F66 4.96333639
77V:V:Y68 4.492539
78V:V:I73 5.76408
79V:V:M76 8.12427
80V:V:R82 7.76539
81V:V:Y85 8.86454
82V:V:F86 8.055444
83V:V:R88 7.456544
84V:V:L104 4.21254195
85V:V:T116 5.6125408
86V:V:F119 6.24479
87V:V:L121 4.742577
88V:V:Y126 6.845455
89V:V:Q134 5.83254218
90V:V:D139 8.48754228
91V:V:F148 7.0525407
92V:V:K151 5.88448
93V:V:V171 3.9025407
94V:V:R176 8.6875409
95V:V:K177 8.8175459
96V:V:P189 5.285409
97V:V:K202 4.6225407
98V:V:K212 7.4775468
99V:V:E213 7.09254237
100V:V:Y215 7.81833666
101V:V:E219 6.9275467
102V:V:I221 8.62468
103V:V:P222 4.01464
104V:V:V223 4.9854247
105V:V:T228 3.0325405
106V:V:V242 3.92407
107V:V:E243 8.636505
108V:V:N247 9.14136
109V:V:L250 5.614538
110V:V:Y251 4.3875437
111V:V:V269 3.46406
112V:V:Q270 3.355404
113V:V:L281 4.38754245
114V:V:L285 4.074218
115V:V:I312 4.81405
116V:V:I324 5.425438
117V:V:Y328 7.34569
118V:V:F354 5.0925465
119V:V:R355 7.35754234
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:M44 R:R:Y43 11.05183.59YesYes874
2R:R:P267 R:R:P291 25.42453.9NoYes097
3R:R:F294 R:R:P267 13.39617.22NoNo079
4R:R:F293 R:R:F294 20.105911.79NoNo047
5R:R:F293 R:R:Y43 19.221913.41NoYes844
6R:R:D190 R:R:Y192 12.22826.9YesYes144
7R:R:D190 R:R:N200 24.024610.77YesYes145
8R:R:N200 R:R:S176 24.88777.45YesNo055
9R:R:F203 R:R:S176 25.063510.57YesNo065
10R:R:F203 R:R:W175 24.778813.03YesYes064
11R:R:W175 R:R:Y206 25.87738.68YesNo043
12R:R:H211 R:R:Y206 26.036713.07YesNo263
13R:R:H211 R:R:W126 29.67224.23YesYes266
14R:R:T160 R:R:W126 86.76823.64YesYes266
15R:R:S127 R:R:T160 90.92163.2YesYes276
16R:R:I75 R:R:S127 95.80194.64YesYes277
17R:R:E134 R:R:I75 91.72886.83NoYes287
18R:R:E134 R:R:F148 92.21018.16NoYes086
19R:R:F148 R:R:L72 93.04298.53YesNo068
20R:R:L72 R:R:V138 99.61872.98NoNo088
21R:R:P267 R:R:V266 13.0193.53NoNo095
22R:R:L262 R:R:V266 13.40592.98NoNo055
23R:R:F220 R:R:L262 13.75563.65YesNo1045
24R:R:F220 R:R:F261 14.45763.22YesNo1049
25R:R:F261 R:R:W265 16.15155.01NoNo098
26R:R:L125 R:R:W265 52.615311.39NoNo078
27R:R:F294 R:R:I263 32.96695.02NoNo076
28R:R:I263 R:R:Y301 34.13524.84NoYes065
29R:R:C264 R:R:Y301 34.87624.03NoYes1195
30R:R:C264 R:R:W265 36.127811.75NoNo098
31R:R:E122 R:R:L125 26.72215.3YesNo067
32R:R:P215 R:R:W126 26.674312.16YesYes286
33R:R:N145 R:R:V138 99.70945.91NoNo058
34R:R:N145 V:V:Y68 99.79644.65NoYes059
35R:R:P142 V:V:Y68 49.63365.56YesYes379
36R:R:P142 V:V:F66 49.54024.33YesYes379
37V:V:L250 V:V:Y68 49.19113.52YesYes389
38V:V:F66 V:V:L250 53.37217.31YesYes398
39R:R:I179 R:R:P180 10.40753.39YesYes131
40R:R:P291 R:R:V271 22.39477.07YesNo075
41R:R:I275 R:R:V271 10.75153.07NoNo1255
42R:R:F283 R:R:Y274 16.13374.13YesNo023
43R:R:H278 R:R:Y274 14.342425.04NoNo033
44R:R:H278 R:R:T277 12.55085.48NoNo034
45R:R:F273 R:R:T277 10.75895.19NoNo054
46R:R:F287 R:R:V271 10.75156.55NoNo1255
47V:V:F66 V:V:L84 1004.87YesNo098
48V:V:C64 V:V:L84 99.88326.35NoNo098
49V:V:C64 V:V:F148 99.76619.78NoYes097
50V:V:F148 V:V:K177 66.98879.93YesYes079
51V:V:F123 V:V:F148 23.69693.22NoYes057
52V:V:F123 V:V:L62 30.752810.96NoNo056
53V:V:L121 V:V:L62 30.51386.92YesNo076
54V:V:F148 V:V:S130 16.77235.28YesNo079
55V:V:R176 V:V:S130 16.51735.27YesNo099
56V:V:I300 V:V:R176 15.771711.27NoYes079
57V:V:I300 V:V:R30 15.27897.52NoYes079
58R:R:?338 V:V:R30 13.92838.24YesYes989
59V:V:L121 V:V:V42 16.98565.96YesYes777
60V:V:V42 V:V:Y32 10.312411.36YesYes777
61V:V:D34 V:V:K177 63.28517.97NoYes599
62V:V:D34 V:V:Q179 70.24399.14NoNo099
63V:V:I312 V:V:Q179 69.66596.86YesNo059
64V:V:I312 V:V:R355 39.27875.01YesYes054
65V:V:R355 V:V:S310 29.66085.27YesNo048
66V:V:S310 V:V:Y328 58.76363.82NoYes089
67V:V:F354 V:V:Y328 52.64666.19YesYes659
68V:V:F354 V:V:I330 19.41216.28YesNo057
69V:V:I330 V:V:V242 18.73144.61NoYes077
70V:V:V242 V:V:V260 17.95713.21YesNo078
71V:V:I312 V:V:M357 30.0095.83YesNo058
72V:V:M357 V:V:S310 29.57543.07NoNo088
73V:V:N288 V:V:V260 11.29315.91NoNo098
74V:V:N288 V:V:R291 10.78329.64NoNo097
75V:V:I294 V:V:R291 10.27517.52NoNo077
76V:V:F354 V:V:Y215 18.05084.13YesYes656
77V:V:P222 V:V:Y215 13.5745.56YesYes646
78V:V:P222 V:V:T278 26.12291.75YesNo045
79V:V:T224 V:V:T278 25.12039.42NoNo055
80V:V:T224 V:V:T276 23.12091.57NoNo055
81V:V:T226 V:V:T276 22.12127.85NoNo045
82V:V:F354 V:V:I221 16.02763.77YesYes658
83V:V:I221 V:V:P222 13.53633.39YesYes684
84V:V:T226 V:V:T228 19.12151.57NoYes045
85V:V:N230 V:V:T228 15.11994.39NoYes055
86V:V:N230 V:V:P203 14.11964.89NoNo056
87V:V:K202 V:V:P203 12.11981.67YesNo076
88R:R:E122 R:R:W126 29.56467.63YesYes266
89R:R:L125 R:R:P215 26.32239.85NoYes078
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 5W0P
Class A
SubFamily Sensory
Type Opsins
SubType Rhodopsin
Species Homo Sapiens
Ligand -
Other Ligand(s) -
Protein Partners Arrestin1
PDB Resolution 3.01
Date 2017-08-09
D.O.I. 10.1016/j.cell.2017.07.002
Net Summary
Imin 2.98
Number of Linked Nodes 650
Number of Links 768
Number of Hubs 119
Number of Links mediated by Hubs 417
Number of Communities 25
Number of Nodes involved in Communities 176
Number of Links involved in Communities 238
Path Summary
Number Of Nodes in MetaPath 90
Number Of Links MetaPath 89
Number of Shortest Paths 809411
Length Of Smallest Path 3
Average Path Length 30.196
Length of Longest Path 60
Minimum Path Strength 1.135
Average Path Strength 6.36322
Maximum Path Strength 27.225
Minimum Path Correlation 0.7
Average Path Correlation 0.970283
Maximum Path Correlation 1
Minimum % Of Corr. Nodes 2.63158
Average % Of Corr. Nodes 41.7238
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 47.6323
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• hydrolase activity, acting on glycosyl bonds   • peptidoglycan muralytic activity   • hydrolase activity, hydrolyzing O-glycosyl compounds   • lysozyme activity   • hydrolase activity   • catalytic activity   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • G protein-coupled photoreceptor activity   • photoreceptor activity   • vitamin binding   • binding   • retinal binding   • isoprenoid binding   • retinoid binding   • lipid binding   • 11-cis retinal binding   • small molecule binding   • cation binding   • ion binding   • metal ion binding   • cytoskeletal protein binding   • spectrin binding   • protein-containing complex binding   • protein binding   • opsin binding   • phosphoprotein binding   • biological process involved in interspecies interaction between organisms   • response to stimulus   • response to other organism   • defense response   • response to external stimulus   • response to biotic stimulus   • defense response to bacterium   • defense response to other organism   • response to stress   • response to bacterium   • response to external biotic stimulus   • carbohydrate derivative catabolic process   • catabolic process   • peptidoglycan catabolic process
Gene OntologyBiological Process• biological process involved in interspecies interaction between organisms   • response to stimulus   • response to other organism   • defense response   • response to external stimulus   • response to biotic stimulus   • defense response to bacterium   • defense response to other organism   • response to stress   • response to bacterium   • response to external biotic stimulus   • carbohydrate derivative catabolic process   • catabolic process   • peptidoglycan catabolic process   • glycosaminoglycan metabolic process   • carbohydrate derivative metabolic process   • aminoglycan catabolic process   • macromolecule catabolic process   • glycosaminoglycan catabolic process   • aminoglycan metabolic process   • peptidoglycan metabolic process   • metabolic process   • cellular process   • macromolecule metabolic process   • symbiont-mediated cytolysis of host cell   • viral life cycle   • disruption of cell in another organism   • cytolysis   • biological process involved in interaction with host   • biological process involved in symbiotic interaction   • viral release from host cell by cytolysis   • exit from host cell   • viral process   • cytolysis in another organism   • viral release from host cell   • disruption of anatomical structure in another organism   • symbiont-mediated killing of host cell   • killing of cells of another organism   • cell killing   • cell wall organization or biogenesis   • cell wall macromolecule catabolic process   • cell wall macromolecule metabolic process   • multicellular organismal process   • rod bipolar cell differentiation   • cellular developmental process   • sensory organ development   • retina development in camera-type eye   • visual system development   • neural retina development   • neurogenesis   • multicellular organism development   • eye morphogenesis   • neuron differentiation   • cell differentiation   • anatomical structure development   • animal organ morphogenesis   • sensory system development   • system development   • developmental process   • camera-type eye morphogenesis   • eye development   • animal organ development   • nervous system development   • retinal bipolar neuron differentiation   • glutamatergic neuron differentiation   • generation of neurons   • retina morphogenesis in camera-type eye   • anatomical structure morphogenesis   • sensory organ morphogenesis   • camera-type eye development   • cellular response to stimulus   • response to light stimulus   • cellular response to light stimulus   • response to radiation   • response to abiotic stimulus   • cellular response to radiation   • cellular response to abiotic stimulus   • cellular response to environmental stimulus   • regulation of cellular process   • signaling   • detection of abiotic stimulus   • cell communication   • signal transduction   • detection of light stimulus   • phototransduction   • detection of external stimulus   • regulation of biological process   • biological regulation   • detection of visible light   • detection of stimulus   • G protein-coupled receptor signaling pathway   • G protein-coupled opsin signaling pathway   • phototransduction, visible light   • response to light intensity   • podosome assembly   • organelle assembly   • protein-containing complex organization   • membraneless organelle assembly   • cellular component organization   • cellular component biogenesis   • organelle organization   • cellular component assembly   • protein-containing complex assembly   • cellular component organization or biogenesis   • biosynthetic process   • gene expression   • macromolecule biosynthetic process   • multicellular organismal-level homeostasis   • homeostatic process   • anatomical structure homeostasis   • tissue homeostasis   • retina homeostasis   • photoreceptor cell maintenance   • absorption of visible light   • light absorption   • microtubule cytoskeleton organization   • microtubule-based process   • cytoskeleton organization   • sensory perception of light stimulus   • system process   • sensory perception   • nervous system process   • visual perception   • thermoception   • sensory perception of temperature stimulus   • detection of temperature stimulus involved in sensory perception   • response to temperature stimulus   • detection of temperature stimulus involved in thermoception   • detection of temperature stimulus   • detection of stimulus involved in sensory perception   • taxis   • thermotaxis   • locomotion   • host cellular component   • host intracellular part   • cellular anatomical structure   • host cell cytoplasm   • host cell part   • host intracellular region   • membrane   • cell-cell junction   • anchoring junction   • cell junction   • membrane-bounded organelle   • intracellular anatomical structure   • intracellular vesicle   • intracellular membrane-bounded organelle
Gene OntologyCellular Component• host cellular component   • host intracellular part   • cellular anatomical structure   • host cell cytoplasm   • host cell part   • host intracellular region   • membrane   • cell-cell junction   • anchoring junction   • cell junction   • membrane-bounded organelle   • intracellular anatomical structure   • intracellular vesicle   • intracellular membrane-bounded organelle   • intracellular organelle   • cytoplasmic vesicle membrane   • bounding membrane of organelle   • vesicle membrane   • cytoplasmic vesicle   • Golgi-associated vesicle membrane   • organelle   • cytoplasm   • Golgi-associated vesicle   • vesicle   • organelle membrane   • photoreceptor inner segment   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • cell periphery   • plasma membrane   • sperm midpiece   • 9+2 motile cilium   • sperm flagellum   • motile cilium   • photoreceptor inner segment membrane   • plasma membrane region   • ciliary membrane   • cell projection membrane   • photoreceptor outer segment membrane   • Golgi apparatus   • endomembrane system   • Golgi membrane   • sperm head   • sperm head plasma membrane   • sperm plasma membrane   • rod photoreceptor outer segment   • hydrolase activity, acting on glycosyl bonds   • peptidoglycan muralytic activity   • hydrolase activity, hydrolyzing O-glycosyl compounds   • lysozyme activity   • hydrolase activity   • catalytic activity   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • G protein-coupled photoreceptor activity   • photoreceptor activity   • vitamin binding   • binding   • retinal binding   • isoprenoid binding   • retinoid binding   • lipid binding   • 11-cis retinal binding   • small molecule binding   • cation binding   • ion binding   • metal ion binding   • cytoskeletal protein binding   • spectrin binding   • protein-containing complex binding   • protein binding   • opsin binding   • phosphoprotein binding   • biological process involved in interspecies interaction between organisms   • response to stimulus   • response to other organism   • defense response   • response to external stimulus   • response to biotic stimulus   • defense response to bacterium   • defense response to other organism   • response to stress   • response to bacterium   • response to external biotic stimulus   • carbohydrate derivative catabolic process   • catabolic process   • peptidoglycan catabolic process   • glycosaminoglycan metabolic process   • carbohydrate derivative metabolic process   • aminoglycan catabolic process   • macromolecule catabolic process   • glycosaminoglycan catabolic process   • aminoglycan metabolic process   • peptidoglycan metabolic process   • metabolic process   • cellular process   • macromolecule metabolic process   • symbiont-mediated cytolysis of host cell   • viral life cycle   • disruption of cell in another organism   • cytolysis   • biological process involved in interaction with host   • biological process involved in symbiotic interaction   • viral release from host cell by cytolysis   • exit from host cell   • viral process   • cytolysis in another organism   • viral release from host cell   • disruption of anatomical structure in another organism   • symbiont-mediated killing of host cell   • killing of cells of another organism   • cell killing   • cell wall organization or biogenesis   • cell wall macromolecule catabolic process   • cell wall macromolecule metabolic process   • multicellular organismal process   • rod bipolar cell differentiation   • cellular developmental process   • sensory organ development   • retina development in camera-type eye   • visual system development   • neural retina development   • neurogenesis   • multicellular organism development   • eye morphogenesis   • neuron differentiation   • cell differentiation   • anatomical structure development   • animal organ morphogenesis   • sensory system development   • system development   • developmental process   • camera-type eye morphogenesis   • eye development   • animal organ development   • nervous system development   • retinal bipolar neuron differentiation   • glutamatergic neuron differentiation   • generation of neurons   • retina morphogenesis in camera-type eye   • anatomical structure morphogenesis   • sensory organ morphogenesis   • camera-type eye development   • cellular response to stimulus   • response to light stimulus   • cellular response to light stimulus   • response to radiation   • response to abiotic stimulus   • cellular response to radiation   • cellular response to abiotic stimulus   • cellular response to environmental stimulus   • regulation of cellular process   • signaling   • detection of abiotic stimulus   • cell communication   • signal transduction   • detection of light stimulus   • phototransduction   • detection of external stimulus   • regulation of biological process   • biological regulation   • detection of visible light   • detection of stimulus   • G protein-coupled receptor signaling pathway   • G protein-coupled opsin signaling pathway   • phototransduction, visible light   • response to light intensity   • podosome assembly   • organelle assembly   • protein-containing complex organization   • membraneless organelle assembly   • cellular component organization   • cellular component biogenesis   • organelle organization   • cellular component assembly   • protein-containing complex assembly   • cellular component organization or biogenesis   • biosynthetic process   • gene expression   • macromolecule biosynthetic process   • multicellular organismal-level homeostasis   • homeostatic process   • anatomical structure homeostasis   • tissue homeostasis   • retina homeostasis   • photoreceptor cell maintenance   • absorption of visible light   • light absorption   • microtubule cytoskeleton organization   • microtubule-based process   • cytoskeleton organization   • sensory perception of light stimulus   • system process   • sensory perception   • nervous system process   • visual perception   • thermoception   • sensory perception of temperature stimulus   • detection of temperature stimulus involved in sensory perception   • response to temperature stimulus   • detection of temperature stimulus involved in thermoception   • detection of temperature stimulus   • detection of stimulus involved in sensory perception   • taxis   • thermotaxis   • locomotion
SCOP2Domain Identifier• G protein-coupled receptor-like
SCOP2Family Identifier• G protein-coupled receptor-like
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNAG
PDB ResiduesH:H:?1 H:H:?2
Environment DetailsOpen EMBL-EBI Page
CodeNAG
NameN-Acetylglucosamine
SynonymsN-Acetyl-D-glucosamine
Identifier
FormulaC8 H15 N O6
Molecular Weight221.208
SMILES
PubChem24139
Formal Charge0
Total Atoms30
Total Chiral Atoms5
Total Bonds30
Total Aromatic Bonds0

CodeTPO
PDB ResiduesR:R:?336
Environment DetailsOpen EMBL-EBI Page
CodeTPO
NamePHOSPHOTHREONINE
SynonymsPHOSPHONOTHREONINE
Identifier
FormulaC4 H10 N O6 P
Molecular Weight199.099
SMILES
PubChem3246323
Formal Charge0
Total Atoms22
Total Chiral Atoms2
Total Bonds21
Total Aromatic Bonds0

CodeSEP
PDB ResiduesR:R:?338
Environment DetailsOpen EMBL-EBI Page
CodeSEP
NameDexfosfoserine
SynonymsPHOSPHONOSERINE
Identifier
FormulaC3 H8 N O6 P
Molecular Weight185.072
SMILES
PubChem57689797
Formal Charge0
Total Atoms19
Total Chiral Atoms1
Total Bonds18
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP08100
Sequence
>5W0P_Chain_R
MCGTEGPNF YVPFSNATG VVRSPFEYP QYYLAEPWQ FSMLAAYMF 
LLIVLGFPI NFLTLYVTV QHKKLRTPL NYILLNLAV ADLFMVLGG 
FTSTLYTSL HGYFVFGPT GCNLQGFFA TLGGEIALW SLVVLAIER 
YVVVCKPMS NFRFGENHA IMGVAFTWV MALACAAPP LAGWSRYIP 
EGLQCSCGI DYYTLKPEV NNESFVIYM FVVHFTIPM IIIFFCYGQ 
LVFTVKEAA AQQQESATT QKAEKEVTR MVIIYVIAF LICWVPYAS 
VAFYIFTHQ GSCFGPIFM TIPAFFAKS AAIYNPVIY IMMNKQFRN 
CMLTTICCG DDEASA?V? KTETS


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

ChainV
ProteinArrestin
UniProtP20443
Sequence
>5W0P_Chain_V
VIFKKVSRD KSVTIYLGK RDYVDHVSQ VEPVDGVVL VDPELVKGK 
KVYVTLTCA FRYGQEDID VMGLTFRRD LYFSRVQVY PPVGAMSVL 
TQLQESLLK KLGDNTYPF LLTFPDYLP CSVMLQPAP QDVGKSCGV 
DFEVKAFAS DITDPEEDK IPKKSSVRL LIRKVQHAP PEMGPQPSA 
EASWQFFMS DKPLNLSVS LSKEIYFHG EPIPVTVTV TNNTDKVVK 
KIKVSVEQI ANVVLYSSD YYVKPVASE ETQEKVQPN STLTKTLVL 
VPLLANNRE RRGIALDGK IKHEDTNLA SSTIIKEGI DRTVMGILV 
SYHIKVKLT VSGFLGELT SSEVATEVP FRLMHPQPE


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8P15ASensoryOpsinRhodopsinBos taurus--Gi1/β1/γT15.92024-11-20To be published
8P15 (No Gprot) ASensoryOpsinRhodopsinBos taurus--5.92024-11-20To be published
8P13ASensoryOpsinRhodopsinBos taurus--Gi1/β1/γT15.22024-11-20To be published
8P13 (No Gprot) ASensoryOpsinRhodopsinBos taurus--5.22024-11-20To be published
8P12ASensoryOpsinsRhodopsinBos taurus--Gi1/β1/γT13.212024-11-20To be published
8P12 (No Gprot) ASensoryOpsinsRhodopsinBos taurus--3.212024-11-20To be published
9EPRASensoryOpsinsRhodopsinHasarius adansoniRetinal-Gi1/β1/γ24.92024-10-30doi.org/10.1038/s41467-024-53208-2
9EPR (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoniRetinal-4.92024-10-30doi.org/10.1038/s41467-024-53208-2
9EPQASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-chim(Gi1-CtGq)/β1/γ24.152024-10-2310.1038/s41467-024-53208-2
9EPQ (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-4.152024-10-2310.1038/s41467-024-53208-2
9EPPASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-chim(Gi1-CtGq)/β1/γ24.062024-10-2310.1038/s41467-024-53208-2
9EPP (No Gprot) ASensoryOpsinsRhodopsinHasarius adansoni11,20-Ethanoretinal-4.062024-10-2310.1038/s41467-024-53208-2
8FD1ASensoryOpsinsRhodopsinBos taurus---4.252023-08-3010.1038/s41467-023-40911-9
8FD1 (Multimeric) ASensoryOpsinsRhodopsinBos taurus--4.252023-08-3010.1038/s41467-023-40911-9
8FD0ASensoryOpsinsRhodopsinBos taurus---3.712023-08-3010.1038/s41467-023-40911-9
8FD0 (Multimeric) ASensoryOpsinsRhodopsinBos taurus--3.712023-08-3010.1038/s41467-023-40911-9
8FCZASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.72023-08-3010.1038/s41467-023-40911-9
8FCZ (Multimeric) ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal-3.72023-08-3010.1038/s41467-023-40911-9
8A6EASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
8A6DASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
8A6CASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
7ZBEASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
7ZBCASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--1.82023-03-2910.1038/s41586-023-05863-6
7MTBASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK142021-07-0710.1038/s41586-021-03721-x
7MTB (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-42021-07-0710.1038/s41586-021-03721-x
7MTAASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK14.12021-07-0710.1038/s41586-021-03721-x
7MTA (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-4.12021-07-0710.1038/s41586-021-03721-x
7MT9ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK172021-07-0710.1038/s41586-021-03721-x
7MT9 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-72021-07-0710.1038/s41586-021-03721-x
7MT8ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-GRK15.82021-07-0710.1038/s41586-021-03721-x
7MT8 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-5.82021-07-0710.1038/s41586-021-03721-x
6PH7ASensoryOpsinsRhodopsinBos taurus-NerolGt(CT)2.92020-07-01To be published
6PH7 (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Nerol2.92020-07-01To be published
6PGSASensoryOpsinsRhodopsinBos taurus-GeraniolGt(CT)2.92020-07-01To be published
6PGS (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Geraniol2.92020-07-01To be published
6PELASensoryOpsinsRhodopsinBos taurus-CitronellolGt(CT)3.192020-06-24To be published
6PEL (No Gprot) ASensoryOpsinsRhodopsinBos taurus-Citronellol3.192020-06-24To be published
6NWEASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Gt(CT)2.712020-02-12To be published
6NWE (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-2.712020-02-12To be published
6OFJASensoryOpsinsRhodopsinBos taurus---4.52019-08-2110.1074/jbc.RA119.010089
6OFJ (Multimeric) ASensoryOpsinsRhodopsinBos taurus--4.52019-08-2110.1074/jbc.RA119.010089
6OYAASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt/β1/γ13.32019-07-2410.1016/j.molcel.2019.06.007
6OYA (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.32019-07-2410.1016/j.molcel.2019.06.007
6OY9ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt/β1/γ13.92019-07-2410.1016/j.molcel.2019.06.007
6OY9 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.92019-07-2410.1016/j.molcel.2019.06.007
6QNOASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gi1/β1/γ14.382019-07-1010.7554/eLife.46041
6QNO (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-4.382019-07-1010.7554/eLife.46041
6I9KASensoryOpsinsRhodopsinHasarius adansoni9-cis-Retinal--2.152019-07-0310.1073/pnas.1902192116
6FUFASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Go3.122018-10-0310.1126/sciadv.aat7052
6FUF (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.122018-10-0310.1126/sciadv.aat7052
6CMOASensoryOpsinsRhodopsinHomo sapiens--Gi1/β1/γ24.52018-06-2010.1038/s41586-018-0215-y
6CMO (No Gprot) ASensoryOpsinsRhodopsinHomo sapiens--4.52018-06-2010.1038/s41586-018-0215-y
6FKDASensoryOpsinsRhodopsinBos taurus-PubChem 137349183-2.492018-04-0410.1073/pnas.1718084115
6FKCASensoryOpsinsRhodopsinBos taurus-PubChem 132473039-2.462018-04-0410.1073/pnas.1718084115
6FKBASensoryOpsinsRhodopsinBos taurus-PubChem 132473038-3.032018-04-0410.1073/pnas.1718084115
6FKAASensoryOpsinsRhodopsinBos taurus-PubChem 132473037-2.72018-04-0410.1073/pnas.1718084115
6FK9ASensoryOpsinsRhodopsinBos taurus-PubChem 132473036-2.632018-04-0410.1073/pnas.1718084115
6FK8ASensoryOpsinsRhodopsinBos taurus-PubChem 132473035-2.872018-04-0410.1073/pnas.1718084115
6FK7ASensoryOpsinsRhodopsinBos taurus-PubChem 132473034-2.622018-04-0410.1073/pnas.1718084115
6FK6ASensoryOpsinsRhodopsinBos taurus-PubChem 132473033-2.362018-04-0410.1073/pnas.1718084115
5WKTASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Gt(CT)3.22017-12-1310.1038/nprot.2017.135
5WKT (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-3.22017-12-1310.1038/nprot.2017.135
5W0PASensoryOpsinsRhodopsinHomo sapiens--Arrestin13.012017-08-0910.1016/j.cell.2017.07.002
5TE5ASensoryOpsinsRhodopsinBos taurus20-Methanoretinal--4.012017-03-1510.1073/pnas.1617446114
5TE3ASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside--2.72017-03-1510.1073/pnas.1617446114
5DYSASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.32016-08-1010.15252/embr.201642671
5EN0ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)2.812016-08-1010.15252/embr.201642671
5EN0 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-2.812016-08-1010.15252/embr.201642671
5DGYASensoryOpsinsRhodopsinHomo sapiens--Arrestin17.72016-03-2310.1038/sdata.2016.21
4X1HASensoryOpsinsRhodopsinBos taurusNonyl-β-D-Glucopyranoside-Gt(CT)2.292015-11-0410.1016/j.str.2015.09.015
4X1H (No Gprot) ASensoryOpsinsRhodopsinBos taurusNonyl-β-D-Glucopyranoside-2.292015-11-0410.1016/j.str.2015.09.015
4ZWJASensoryOpsinsRhodopsinHomo sapiens--Arrestin13.32015-07-2910.1038/nature14656
4WW3ASensoryOpsinsRhodopsinTodarodes pacificusAll-trans-Retinal--2.82015-06-1710.1371/journal.pone.0126970
4PXFASensoryOpsinsRhodopsinBos taurusOctyl-β-D-Glucopyranoside-Arrestin1 Finger Loop2.752014-09-1710.1038/ncomms5801
4J4QASensoryOpsinsRhodopsinBos taurusOctyl β-D-Glucopyranoside-Gt(CT)2.652013-10-3010.1002/anie.201302374
4J4Q (No Gprot) ASensoryOpsinsRhodopsinBos taurusOctyl β-D-Glucopyranoside-2.652013-10-3010.1002/anie.201302374
4BEYASensoryOpsinsRhodopsinBos taurus--Gt(CT)2.92013-05-0810.1038/embor.2013.44
4BEY (No Gprot) ASensoryOpsinsRhodopsinBos taurus--2.92013-05-0810.1038/embor.2013.44
4BEZASensoryOpsinsRhodopsinBos taurus---3.32013-04-2410.1038/embor.2013.44
4A4MASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)3.32012-01-2510.1073/pnas.1114089108
4A4M (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-3.32012-01-2510.1073/pnas.1114089108
3AYNASensoryOpsinsRhodopsinTodarodes pacificus9-cis-Retinal--2.72011-08-1710.1016/j.jmb.2011.08.044
3AYMASensoryOpsinsRhodopsinTodarodes pacificusAll-trans-Retinal--2.82011-08-1710.1016/j.jmb.2011.08.044
2X72ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)32011-03-1610.1038/nature09795
2X72 (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-32011-03-1610.1038/nature09795
3PXOASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--32011-03-0910.1038/nature09789
3PQRASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-Gt(CT)2.852011-03-0910.1038/nature09789
3PQR (No Gprot) ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal-2.852011-03-0910.1038/nature09789
3OAXASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.62011-01-1910.1016/j.bpj.2010.08.003
3DQBASensoryOpsinsRhodopsinBos taurus--Gt(CT)3.22008-09-2310.1038/nature07330
3DQB (No Gprot) ASensoryOpsinsRhodopsinBos taurus--3.22008-09-2310.1038/nature07330
3C9MASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.42008-08-0510.1107/S0907444908017162
3C9LASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.652008-08-0510.1107/S0907444908017162
3CAPASensoryOpsinsRhodopsinBos taurus---2.92008-06-2410.1038/nature07063
3CAP (Multimeric) ASensoryOpsinsRhodopsinBos taurus--2.92008-06-2410.1038/nature07063
2Z73ASensoryOpsinsRhodopsinTodarodes pacificus11-cis-Retinal--2.52008-05-1310.1038/nature06925
2ZIYASensoryOpsinsRhodopsinTodarodes pacificus11-cis-Retinal--3.72008-05-0610.1074/jbc.C800040200
2PEDASensoryOpsinsRhodopsinBos taurus9-cis-Retinal--2.952007-10-3010.1529/biophysj.107.108225
2J4YASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.42007-09-2510.1016/j.jmb.2007.03.007
2I37ASensoryOpsinsRhodopsinBos taurus---4.152006-10-1710.1073/pnas.0608022103
2I36ASensoryOpsinsRhodopsinBos taurus---4.12006-10-1710.1073/pnas.0608022103
2I35ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--3.82006-10-1710.1073/pnas.0608022103
2G87ASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.62006-09-0210.1002/anie.200600595
2HPYASensoryOpsinsRhodopsinBos taurusAll-trans-Retinal--2.82006-08-2210.1073/pnas.0601765103
1U19ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.22004-10-1210.1016/j.jmb.2004.07.044
1GZMASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.652003-11-2010.1016/j.jmb.2004.08.090
1L9HASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.62002-05-1510.1073/pnas.082666399
1HZXASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.82001-07-0410.1021/bi0155091
1F88ASensoryOpsinsRhodopsinBos taurus11-cis-Retinal--2.82000-08-0410.1126/science.289.5480.739




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 5W0P.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.