Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:L43 4.422507
2R:R:L78 7.065429
3R:R:D82 6.12333629
4R:R:W102 7.43667659
5R:R:D116 9.395418
6R:R:W125 7.235407
7R:R:H126 7.86667628
8R:R:Y135 9.626509
9R:R:W161 8.895429
10R:R:P170 4.7438
11R:R:W175 5.6375436
12R:R:Y195 6.036538
13R:R:F204 8.04167618
14R:R:Y215 5.64509
15R:R:E340 11.0525408
16R:R:L347 2.9575408
17R:R:W358 7.44286718
18R:R:L359 4.1775407
19R:R:F361 10.3025418
20R:R:F362 8.308517
21R:R:Y390 9.948518
22R:R:N396 8.865429
23R:R:Y400 5.68409
24R:R:F407 7.31608
25L:L:?1 7.710771310
26W:W:?1 8.7931000
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:L43 R:R:T39 10.22852.95YesNo075
2R:R:L43 R:R:W387 22.475611.39YesNo078
3R:R:W387 R:R:Y390 27.480118.33NoYes088
4R:R:L83 R:R:V51 11.48444.47NoNo087
5R:R:L83 R:R:N54 13.09475.49NoNo089
6R:R:D82 R:R:N54 14.66276.73YesNo299
7R:R:D82 R:R:N396 19.99086.73YesYes299
8R:R:N392 R:R:N396 98.451312.26NoYes099
9R:R:N392 R:R:W358 10012.43NoYes098
10R:R:C120 R:R:W358 50.05595.22NoYes178
11R:R:C120 R:R:D116 22.3874.67NoYes178
12L:L:?1 R:R:C120 27.28748.1YesNo107
13L:L:?1 R:R:Y390 30.06137.69YesYes108
14R:R:F361 R:R:W358 28.49335.01YesYes188
15L:L:?1 R:R:F361 27.372221.31YesYes108
16R:R:F362 R:R:W358 28.13885.01YesYes178
17L:L:?1 R:R:F362 40.27437.99YesYes107
18R:R:R134 W:W:?1 31.29798.95NoYes090
19R:R:I130 R:R:R134 32.66946.26NoNo099
20R:R:I130 R:R:Y400 44.42356.04NoYes099
21R:R:L127 R:R:Y400 69.42258.21NoYes089
22R:R:L127 R:R:N396 63.66310.98NoYes289
23R:R:F407 R:R:I75 21.89786.28YesNo088
24R:R:I75 R:R:Y400 23.29623.63NoYes089
25R:R:F407 R:R:L67 10.43263.65YesNo088
26R:R:L78 R:R:N396 20.2455.49YesYes299
27R:R:H126 R:R:L78 23.70467.71YesYes289
28R:R:I130 R:R:L74 11.89274.28NoNo098
29R:R:D116 R:R:V89 20.865311.69YesNo088
30R:R:F112 R:R:V89 15.62585.24NoNo068
31R:R:F112 R:R:W102 13.54165.01NoYes069
32R:R:R176 R:R:R181 10.12833.2NoNo064
33R:R:R176 R:R:S190 12.13163.95NoNo066
34R:R:S190 R:R:Y195 22.03266.36NoYes068
35R:R:S199 R:R:Y195 37.47355.09NoYes088
36L:L:?1 R:R:S199 39.3698.75YesNo008
37R:R:I124 R:R:W358 56.339310.57NoYes088
38R:R:I124 R:R:P207 55.21443.39NoNo089
39R:R:P207 R:R:W125 51.793410.81NoYes097
40R:R:C128 R:R:W125 41.21823.92NoYes077
41R:R:C128 R:R:L210 39.99314.76NoNo077
42R:R:M211 R:R:Y215 19.91769.58NoYes099
43R:R:F354 R:R:M211 20.82683.73NoNo099
44R:R:F204 R:R:F354 21.63966.43YesNo189
45R:R:F204 R:R:F362 13.607118.22YesYes187
46R:R:L132 R:R:L214 13.44156.92NoNo067
47R:R:L210 R:R:L214 38.76035.54NoNo077
48R:R:L132 R:R:W136 12.123918.22NoNo065
49R:R:L214 R:R:Y135 24.14387.03NoYes079
50R:R:W136 R:R:Y135 12.39744.82NoYes059
51R:R:R152 R:R:W136 21.73987NoNo075
52R:R:D143 R:R:R152 19.24729.53NoNo067
53R:R:F370 R:R:P369 10.12834.33NoNo057
54R:R:P369 R:R:T196 12.13166.99NoNo077
55L:L:?1 R:R:T196 14.12723.22YesNo007
56R:R:F204 R:R:L359 17.35184.87YesYes087
57R:R:L347 R:R:Y215 17.36333.52YesYes089
58R:R:F219 R:R:L347 14.45083.65NoYes068
59R:R:F219 R:R:R223 12.470612.83NoNo067
60R:R:E340 R:R:R223 10.44824.42YesNo087
61R:R:I385 R:R:P360 12.47836.77NoNo069
62R:R:L359 R:R:P360 14.45083.28YesNo079
63R:R:F204 R:R:W358 28.15434.01YesYes188
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:D116 R:R:V89 11.69 1 Yes No 8 8 1 2
R:R:L90 R:R:Y390 9.38 0 No Yes 8 8 2 1
R:R:A93 R:R:Y390 4 0 No Yes 7 8 2 1
R:R:I113 R:R:I189 4.42 0 No No 7 6 2 1
R:R:C120 R:R:D116 4.67 1 No Yes 7 8 1 1
R:R:D116 R:R:Y390 10.34 1 Yes Yes 8 8 1 1
L:L:?1 R:R:D116 10.88 1 Yes Yes 0 8 0 1
L:L:?1 R:R:V117 11.94 1 Yes No 0 8 0 1
R:R:C120 R:R:W358 5.22 1 No Yes 7 8 1 2
L:L:?1 R:R:C120 8.1 1 Yes No 0 7 0 1
R:R:I189 R:R:K191 4.36 0 No No 6 5 1 2
L:L:?1 R:R:I189 4.16 1 Yes No 0 6 0 1
R:R:S199 R:R:Y195 5.09 0 No Yes 8 8 1 2
R:R:P369 R:R:T196 6.99 0 No No 7 7 2 1
L:L:?1 R:R:S199 8.75 1 Yes No 0 8 0 1
R:R:F362 R:R:T200 3.89 1 Yes No 7 7 1 1
L:L:?1 R:R:T200 4.3 1 Yes No 0 7 0 1
R:R:F204 R:R:W358 4.01 1 Yes Yes 8 8 2 2
R:R:F204 R:R:F362 18.22 1 Yes Yes 8 7 2 1
R:R:F361 R:R:W358 5.01 1 Yes Yes 8 8 1 2
R:R:F362 R:R:W358 5.01 1 Yes Yes 7 8 1 2
R:R:F361 R:R:F362 6.43 1 Yes Yes 8 7 1 1
R:R:F361 R:R:N386 8.46 1 Yes No 8 7 1 1
L:L:?1 R:R:F361 21.31 1 Yes Yes 0 8 0 1
L:L:?1 R:R:F362 7.99 1 Yes Yes 0 7 0 1
L:L:?1 R:R:N386 5 1 Yes No 0 7 0 1
R:R:W387 R:R:Y390 18.33 0 No Yes 8 8 2 1
L:L:?1 R:R:Y390 7.69 1 Yes Yes 0 8 0 1
L:L:?1 R:R:A203 3.45 1 Yes No 0 8 0 1
L:L:?1 R:R:A365 3.45 1 Yes No 0 8 0 1
L:L:?1 R:R:T196 3.22 1 Yes No 0 7 0 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:L52 W:W:?1 3.71 0 No Yes 4 0 1 0
R:R:V57 R:R:Y402 5.05 0 No No 9 6 2 1
R:R:I130 R:R:R134 6.26 0 No No 9 9 2 1
R:R:R134 W:W:?1 8.95 0 No Yes 9 0 1 0
R:R:K345 W:W:?1 7.55 0 No Yes 7 0 1 0
R:R:T346 W:W:?1 11.84 0 No Yes 8 0 1 0
R:R:I349 W:W:?1 4.78 0 No Yes 7 0 1 0
R:R:V398 W:W:?1 5.98 0 No Yes 6 0 1 0
R:R:Y402 W:W:?1 9.42 0 No Yes 6 0 1 0
R:R:F403 W:W:?1 22.83 0 No Yes 8 0 1 0
R:R:K405 W:W:?1 9.44 0 No Yes 6 0 1 0
R:R:G53 W:W:?1 3.43 0 No Yes 9 0 1 0
R:R:C56 R:R:L52 3.17 0 No No 8 4 2 1
R:R:K405 R:R:Q408 2.71 0 No No 6 9 1 2
R:R:F48 R:R:L52 1.22 0 No No 4 4 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 9KVG_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.5
Number of Linked Nodes 264
Number of Links 282
Number of Hubs 26
Number of Links mediated by Hubs 118
Number of Communities 7
Number of Nodes involved in Communities 38
Number of Links involved in Communities 52
Path Summary
Number Of Nodes in MetaPath 64
Number Of Links MetaPath 63
Number of Shortest Paths 50911
Length Of Smallest Path 3
Average Path Length 13.0059
Length of Longest Path 26
Minimum Path Strength 1.41
Average Path Strength 7.39578
Maximum Path Strength 18.625
Minimum Path Correlation 0.7
Average Path Correlation 0.933109
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 5
Average % Of Corr. Nodes 54.007
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 39.4766
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• cation binding   • binding   • ion binding   • serotonin binding   • amine binding   • heterocyclic compound binding   • small molecule binding   • G protein-coupled amine receptor activity   • G protein-coupled serotonin receptor activity   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • Gi/o-coupled serotonin receptor activity   • neurotransmitter receptor activity   • serotonin receptor activity   • protein binding   • signaling receptor binding   • receptor-receptor interaction   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • behavior   • multicellular organismal process   • exploration behavior   • regulation of amine metabolic process   • dopamine metabolic process   • primary metabolic process   • catechol-containing compound metabolic process   • regulation of primary metabolic process   • amine metabolic process   • catecholamine metabolic process   • phenol-containing compound metabolic process   • metabolic process   • regulation of catecholamine metabolic process   • regulation of metabolic process   • biogenic amine metabolic process   • regulation of dopamine metabolic process   • adult behavior   • regulation of tube diameter   • system process   • regulation of tube size   • regulation of system process   • circulatory system process   • regulation of blood circulation   • regulation of vasoconstriction   • vascular process in circulatory system   • regulation of multicellular organismal process   • blood vessel diameter maintenance   • regulation of biological quality   • blood circulation   • vasoconstriction   • regulation of anatomical structure size   • cell-cell signaling   • gamma-aminobutyric acid signaling pathway   • regulation of behavior   • serotonin metabolic process   • indole-containing compound metabolic process   • cellular response to nitrogen compound   • response to dopamine   • serotonin receptor signaling pathway   • cellular response to dopamine   • response to monoamine   • response to oxygen-containing compound   • response to nitrogen compound   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • response to catecholamine   • cellular response to monoamine stimulus   • response to chemical   • cellular response to catecholamine stimulus   • cell population proliferation   • positive regulation of cell population proliferation   • regulation of cell population proliferation   • positive regulation of biological process   • positive regulation of cellular process   • regulation of localization   • regulation of hormone secretion   • transport   • hormone secretion   • localization   • regulation of secretion by cell   • secretion by cell   • signal release   • regulation of signaling   • regulation of transport   • secretion   • regulation of hormone levels   • export from cell   • establishment of localization   • regulation of secretion   • regulation of cell communication   • hormone transport   • monoamine transport   • nitrogen compound transport   • organic hydroxy compound transport   • monoatomic ion transport   • serotonin secretion   • regulation of monoatomic ion transport   • regulation of serotonin secretion   • serotonin transport   • trans-synaptic signaling   • synaptic signaling   • anterograde trans-synaptic signaling   • chemical synaptic transmission   • behavioral defense response   • fear response   • behavioral fear response   • defense response   • response to stress   • multicellular organismal response to stress   • G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane   • somatodendritic compartment   • cell projection   • dendrite   • dendritic tree   • neuron projection   • plasma membrane bounded cell projection   • synapse   • cell junction   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • adenylate cyclase-activating dopamine receptor signaling pathway   • G protein-coupled dopamine receptor signaling pathway   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • cellular response to acetylcholine   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • organelle membrane   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • D2 dopamine receptor binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • enzyme regulator activity   • adenylate cyclase inhibitor activity   • cyclase regulator activity   • molecular function inhibitor activity   • cyclase inhibitor activity   • molecular function regulator activity   • enzyme inhibitor activity   • adenylate cyclase regulator activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • G-protein beta/gamma-subunit complex binding   • G protein activity   • neuropeptide signaling pathway   • response to peptide hormone   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • cell surface receptor signaling pathway   • response to cytokine   • response to chemokine   • cytokine-mediated signaling pathway   • cellular response to chemokine   • chemokine-mediated signaling pathway   • response to peptide   • cellular response to cytokine stimulus   • relaxation of smooth muscle   • regulation of muscle system process   • muscle system process   • relaxation of muscle   • positive regulation of relaxation of smooth muscle   • positive regulation of relaxation of muscle   • positive regulation of multicellular organismal process   • regulation of relaxation of smooth muscle   • regulation of relaxation of muscle   • negative regulation of protein transport   • establishment of protein localization   • negative regulation of biological process   • negative regulation of transport   • negative regulation of secretion   • negative regulation of hormone secretion   • negative regulation of secretion by cell   • intracellular protein localization   • regulation of peptide hormone secretion   • negative regulation of peptide hormone secretion   • establishment of protein localization to extracellular region   • negative regulation of establishment of protein localization   • protein secretion   • regulation of protein secretion   • negative regulation of protein secretion   • regulation of protein localization   • regulation of peptide secretion   • negative regulation of signaling   • negative regulation of cell communication   • protein localization to extracellular region   • negative regulation of peptide secretion   • peptide secretion   • negative regulation of cellular process   • negative regulation of protein localization   • regulation of peptide transport   • regulation of establishment of protein localization   • regulation of protein transport   • peptide transport   • negative regulation of insulin secretion   • protein transport   • regulation of insulin secretion   • peptide hormone secretion   • macromolecule localization   • insulin secretion   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • positive regulation of protein localization to cell periphery   • protein localization to cell periphery   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • regulation of protein localization to cell cortex   • positive regulation of protein localization   • protein localization to cell cortex   • cellular response to forskolin   • response to forskolin   • midbody   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • nucleolus   • intracellular organelle lumen   • organelle lumen   • membraneless organelle   • nuclear lumen   • cell cortex   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • sperm principal piece   • 9+2 motile cilium   • sperm flagellum   • motile cilium   • nucleoplasm   • Golgi apparatus   • endomembrane system   • ciliary basal body
Gene OntologyCellular Component
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeYFW
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeYFW
Name5-methoxy-N,N-dimethyltryptamine
Synonyms5-methoxy-N,N-dimethyl-1H-indole-3-ethanamine
Identifier
FormulaC13 H18 N2 O
Molecular Weight218.295
SMILES
PubChem1832
Formal Charge0
Total Atoms34
Total Chiral Atoms0
Total Bonds35
Total Aromatic Bonds10

CodeJ40
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodeJ40
Name[(2R)-1-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-3-tetradecanoyloxy-propan-2-yl] (5E,8E)-hexadeca-5,8,11,14-tetraenoate
Synonyms
Identifier
FormulaC39 H68 O16 P2
Molecular Weight854.895
SMILES
PubChem
Formal Charge0
Total Atoms125
Total Chiral Atoms5
Total Bonds125
Total Aromatic Bonds0

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP08908
Sequence
>9KVG_nogp_Chain_R
SYQVITSLL LGTLIFCAV LGNACVVAA IALERSLQN VANYLIGSL 
AVTDLMVSV LVLPMAALY QVLNKWTLG QVTCDLFIA LDVLCCTSS 
IHLCAIALD RYWAITDPI DYVNKRTPR RAAALISLT WLIGFLISI 
PPMLGWRTP EDRSDPDAC TISKDHGYT IYSTFGAFY IPLLLMLVL 
YGRIFRAAR FRIRKNERN AEAKRKMAL ARERKTVKT LGIIMGTFI 
LCWLPFFIV ALVLPFCES SCHMPTLLG AIINWLGYS NSLLNPVIY 
AYFNKDFQN AFKKIIW


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
7E2XAAmine5-Hydroxytryptamine5-HT1AHomo sapiens-PtdIns4PGi1/β1/γ232021-04-14doi.org/10.1038/s41586-021-03376-8
7E2X (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens-PtdIns4P32021-04-14doi.org/10.1038/s41586-021-03376-8
7E2YAAmine5-Hydroxytryptamine5-HT1AHomo sapiensSerotoninPtdIns4PGi1/β1/γ232021-04-14doi.org/10.1038/s41586-021-03376-8
7E2Y (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensSerotoninPtdIns4P32021-04-14doi.org/10.1038/s41586-021-03376-8
7E2ZAAmine5-Hydroxytryptamine5-HT1AHomo sapiensAripiprazolePtdIns4PGi1/β1/γ23.12021-04-14doi.org/10.1038/s41586-021-03376-8
7E2Z (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensAripiprazolePtdIns4P3.12021-04-14doi.org/10.1038/s41586-021-03376-8
8JSPAAmine5-Hydroxytryptamine5-HT1AHomo sapiensUlotaront-Gi1/β1/γ23.652023-11-15doi.org/10.1038/s41586-023-06804-z
8JSP (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensUlotaront-3.652023-11-15doi.org/10.1038/s41586-023-06804-z
8W8BAAmine5-Hydroxytryptamine5-HT1AHomo sapiensSEP-363856-Gi1/β1/γ232023-11-22doi.org/10.1038/s41586-023-06775-1
8W8B (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensSEP-363856-32023-11-22doi.org/10.1038/s41586-023-06775-1
8FY8AAmine5-Hydroxytryptamine5-HT1AHomo sapiens5-MeO-DMTPtdIns4PGi1/β1/γ12.792024-05-15doi.org/10.1038/s41586-024-07403-2
8FY8 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens5-MeO-DMTPtdIns4P2.792024-05-15doi.org/10.1038/s41586-024-07403-2
8FYEAAmine5-Hydroxytryptamine5-HT1AHomo sapiens4-F,5-MeO-PyrTPtdIns4PGi1/β1/γ12.852024-05-15doi.org/10.1038/s41586-024-07403-2
8FYE (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens4-F,5-MeO-PyrTPtdIns4P2.852024-05-15doi.org/10.1038/s41586-024-07403-2
8FYLAAmine5-Hydroxytryptamine5-HT1AHomo sapiensVilazodonePtdIns4PGi1/β1/γ12.942024-05-15doi.org/10.1038/s41586-024-07403-2
8FYL (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensVilazodonePtdIns4P2.942024-05-15doi.org/10.1038/s41586-024-07403-2
8FYTAAmine5-Hydroxytryptamine5-HT1AHomo sapiensLSDPtdIns4PGi1/β1/γ12.642024-05-15doi.org/10.1038/s41586-024-07403-2
8FYT (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensLSDPtdIns4P2.642024-05-15doi.org/10.1038/s41586-024-07403-2
8FYXAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4PGi1/β1/γ12.722024-05-15doi.org/10.1038/s41586-024-07403-2
8FYX (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4P2.722024-05-15doi.org/10.1038/s41586-024-07403-2
8PJKAAmine5-Hydroxytryptamine5-HT1AHomo sapiensST171-Gi1/β1/γ12.42024-05-29doi.org/10.1126/sciadv.adv9267
8PJK (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensST171-2.42024-05-29doi.org/10.1126/sciadv.adv9267
8PKMAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-Gi1/β1/γ12.92024-05-29doi.org/10.1126/sciadv.adv9267
8PKM (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-2.92024-05-29doi.org/10.1126/sciadv.adv9267
8JT6AAmine5-Hydroxytryptamine5-HT1AHomo sapiens(R)-IHCH-7179PtdIns4PGi1/β1/γ232024-02-28doi.org/10.1016/j.cell.2024.02.034
8JT6 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens(R)-IHCH-7179PtdIns4P32024-02-28doi.org/10.1016/j.cell.2024.02.034
9GL2AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-Gs/β1/γ23.22025-07-02doi.org/10.1126/sciadv.adv9267
9GL2 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBefiradol-3.22025-07-02doi.org/10.1126/sciadv.adv9267
9DYDAAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapinePtdIns4PGo/β1/γ22.962025-08-13doi.org/10.1126/sciadv.adu9851
9DYD (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapinePtdIns4P2.962025-08-13doi.org/10.1126/sciadv.adu9851
9DYEAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4PGo/β1/γ22.92025-08-13doi.org/10.1126/sciadv.adu9851
9DYE (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4P2.92025-08-13doi.org/10.1126/sciadv.adu9851
9DYFAAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapinePtdIns4PGi1/β1/γ22.742025-08-13doi.org/10.1126/sciadv.adu9851
9DYF (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensAsenapinePtdIns4P2.742025-08-13doi.org/10.1126/sciadv.adu9851
9MD1AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4PGz/β1/γ23.032025-08-13doi.org/10.1126/sciadv.adu9851
9MD1 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspironePtdIns4P3.032025-08-13doi.org/10.1126/sciadv.adu9851
9VJ5AAmine5-Hydroxytryptamine5-HT1AHomo sapiensGepirone-Go/β1/γ22.692025-11-12To be published
9VJ5 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensGepirone-2.692025-11-12To be published
9VJ6AAmine5-Hydroxytryptamine5-HT1AHomo sapiensF-15599-Gi3/β1/γ22.622025-11-12To be published
9VJ6 (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensF-15599-2.622025-11-12To be published
9VJEAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-Go/β1/γ22.472025-11-12To be published
9VJE (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-2.472025-11-12To be published
9VJFAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-Gi3/β1/γ22.72025-11-12To be published
9VJF (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBuspirone-2.72025-11-12To be published
9VJGAAmine5-Hydroxytryptamine5-HT1AHomo sapiens8-OH-DPAT-chim(NtGi2-Gz)/β1/γ22.672025-11-12To be published
9VJG (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens8-OH-DPAT-2.672025-11-12To be published
9VMYAAmine5-Hydroxytryptamine5-HT1AHomo sapiensTMU4142-Go/β1/γ22.862025-11-12To be published
9VMY (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensTMU4142-2.862025-11-12To be published
9VNFAAmine5-Hydroxytryptamine5-HT1AHomo sapiensPindolol-Go/β1/γ22.742025-11-12To be published
9VNF (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensPindolol-2.742025-11-12To be published
9KVGAAmine5-Hydroxytryptamine5-HT1AHomo sapiens5-MeO-DMTPtdIns4PGi1/β1/γ22.632025-12-03To be published
9KVG (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiens5-MeO-DMTPtdIns4P2.632025-12-03To be published
9KVHAAmine5-Hydroxytryptamine5-HT1AHomo sapiensCinobufoteninePtdIns4PGi1/β1/γ22.592025-12-03To be published
9KVH (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensCinobufoteninePtdIns4P2.592025-12-03To be published
9KVIAAmine5-Hydroxytryptamine5-HT1AHomo sapiensBufoteninPtdIns4PGi1/β1/γ22.542025-12-03To be published
9KVI (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensBufoteninPtdIns4P2.542025-12-03To be published
9HYIAAmine5-Hydroxytryptamine5-HT1AHomo sapiensDP81-Gi1/β1/γ22.32026-01-21To be published
9HYI (No Gprot) AAmine5-Hydroxytryptamine5-HT1AHomo sapiensDP81-2.32026-01-21To be published




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 9KVG_nogp.zip



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