Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 7.825810
2R:R:F10 6.4425407
3R:R:I26 3.894515
4R:R:L34 6.9525418
5R:R:I51 9.075437
6R:R:F52 7.06437
7R:R:F67 5.54406
8R:R:N68 6.414569
9R:R:L69 4.19429
10R:R:D73 8.298529
11R:R:F74 7.19407
12R:R:L80 7.298518
13R:R:Y87 5.65516
14R:R:W91 5.32167614
15R:R:W93 6.76778979
16R:R:Q112 6.015407
17R:R:Y126 7.50286747
18R:R:R128 5.974508
19R:R:V130 8.5175448
20R:R:H131 6.46447
21R:R:L151 5.525407
22R:R:W152 5.3775469
23R:R:F180 8.755613
24R:R:I182 3.05403
25R:R:F197 6.52667618
26R:R:L201 4.5925417
27R:R:C207 2.725408
28R:R:F244 7.49518
29R:R:Y269 3.0975402
30R:R:F276 7.406514
31R:R:F277 5.87515
32R:R:L280 5.372515
33R:R:T283 6.285418
34R:R:Y284 5.7425817
35R:R:D290 8.754529
36R:R:Y294 6.815409
37R:R:F301 8.2409
38R:R:F304 10.735434
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:F277 1005.65YesYes105
2R:R:F277 R:R:Y87 31.74295.16YesYes156
3R:R:I26 R:R:Y87 25.83423.63YesYes156
4R:R:I26 R:R:R90 39.04413.76YesNo054
5R:R:R22 R:R:R90 33.566112.79NoNo034
6R:R:D8 R:R:R22 30.81465.96NoNo063
7R:R:F277 R:R:W91 73.14966.01YesYes154
8R:R:I26 R:R:W91 29.3513.52YesYes154
9R:R:D8 R:R:F21 28.05472.39NoNo062
10R:R:C266 R:R:F21 19.72482.79NoNo072
11R:R:C19 R:R:C266 16.93157.28NoNo047
12R:R:C19 R:R:F10 14.12985.59NoYes047
13R:R:N86 R:R:W91 45.57585.65NoYes054
14R:R:N86 R:R:W93 44.346410.17NoYes059
15R:R:C100 R:R:W93 20.85816.53NoYes799
16R:R:C100 R:R:M167 19.45726.48NoNo093
17R:R:L104 R:R:M167 17.98534.24NoNo053
18R:R:L104 R:R:L162 16.50925.54NoNo054
19R:R:H161 R:R:L162 15.02476.43NoNo074
20R:R:H161 R:R:Q187 13.52762.47NoNo072
21R:R:K165 R:R:Q187 12.16442.71NoNo042
22R:R:D14 R:R:K165 10.6596.91NoNo054
23R:R:D273 R:R:F277 21.82827.17NoYes045
24R:R:D273 R:R:I182 20.41484.2NoYes043
25R:R:I26 R:R:L274 14.10052.85YesNo051
26L:L:?1 R:R:Y284 40.90916.52YesYes107
27L:L:?1 R:R:R111 61.102310.14YesNo008
28R:R:R111 R:R:T283 16.17469.06NoYes088
29R:R:F244 R:R:T283 61.8095.19YesYes188
30R:R:F244 R:R:N286 24.41678.46YesNo089
31R:R:C243 R:R:N286 22.01227.87NoNo089
32R:R:C243 R:R:M285 14.74876.48NoNo085
33L:L:?1 R:R:L280 13.14717.7YesYes105
34R:R:L280 R:R:T283 28.72795.9YesYes158
35R:R:T283 R:R:Y284 28.81164.99YesYes187
36R:R:L76 R:R:Y284 42.16783.52NoYes077
37R:R:L76 R:R:S287 39.64629.01NoNo078
38R:R:D73 R:R:S287 41.185110.31YesNo098
39R:R:D73 R:R:N45 12.24815.39YesNo299
40R:R:F74 R:R:N45 13.58214.5YesNo079
41R:R:D290 R:R:D73 20.807917.3YesYes299
42R:R:D290 R:R:Y294 20.222513.79YesYes099
43R:R:E196 R:R:R111 54.87583.49NoNo058
44R:R:E196 R:R:Q112 50.171410.19NoYes057
45R:R:I116 R:R:Q112 37.30034.12NoYes057
46R:R:I116 R:R:L151 38.36255.71NoYes057
47R:R:F117 R:R:L151 34.14326.09NoYes087
48R:R:F117 R:R:N68 28.853413.29NoYes689
49R:R:F67 R:R:N68 16.27083.62YesYes069
50R:R:F74 R:R:L49 11.17764.87YesNo077
51R:R:F67 R:R:L49 10.39563.65YesNo067
52R:R:F301 R:R:Y294 17.06114.13YesYes099
53R:R:F52 R:R:F67 13.96259.65YesYes076
54R:R:I64 R:R:N68 20.11372.83NoYes079
55R:R:A144 R:R:I64 15.91124.87NoNo077
56R:R:A144 R:R:S61 14.49361.71NoNo076
57R:R:Q112 R:R:T155 13.24335.67YesNo077
58R:R:M109 R:R:T155 13.59044.52NoNo057
59R:R:I156 R:R:M109 12.23135.83NoNo045
60R:R:E196 R:R:I115 36.19646.83NoNo058
61R:R:I115 R:R:P200 46.11113.39NoNo089
62R:R:P200 R:R:T119 43.10033.5NoNo097
63R:R:I203 R:R:T119 42.086.08NoNo077
64R:R:C207 R:R:I203 41.05131.64YesNo087
65R:R:C207 R:R:Y126 34.44434.03YesYes087
66R:R:I211 R:R:Y126 21.05042.42NoYes087
67R:R:F276 R:R:F277 20.54035.36YesYes145
68R:R:F276 R:R:L280 18.30736.09YesYes145
69L:L:?1 R:R:F180 13.21411.29YesYes103
70R:R:F180 R:R:F193 18.58745.36YesNo036
71R:R:F193 R:R:S247 16.65556.61NoNo066
72R:R:F197 R:R:F244 24.24944.29YesYes188
73R:R:I211 R:R:I233 18.68784.42NoNo087
74R:R:I212 R:R:I233 16.50925.89NoNo057
75R:R:I212 R:R:I230 14.058710.3NoNo056
76R:R:F301 R:R:S298 10.13633.96YesNo098
77R:R:S247 R:R:T279 14.60233.2NoNo067
78R:R:P246 R:R:T279 12.54083.5NoNo097
79R:R:F282 R:R:P246 10.47097.22NoNo079
80R:R:F244 R:R:I115 22.18788.79YesNo088
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:L107 11.55 1 Yes No 0 6 0 1
L:L:?1 R:R:R111 10.14 1 Yes No 0 8 0 1
L:L:?1 R:R:S178 5.57 1 Yes No 0 4 0 1
L:L:?1 R:R:S179 4.18 1 Yes No 0 4 0 1
L:L:?1 R:R:F180 11.29 1 Yes Yes 0 3 0 1
L:L:?1 R:R:F277 5.65 1 Yes Yes 0 5 0 1
L:L:?1 R:R:L280 7.7 1 Yes Yes 0 5 0 1
L:L:?1 R:R:Y284 6.52 1 Yes Yes 0 7 0 1
R:R:E37 R:R:L34 15.9 1 No Yes 7 8 2 2
R:R:L34 R:R:L80 4.15 1 Yes Yes 8 8 2 2
R:R:L34 R:R:Y284 3.52 1 Yes Yes 8 7 2 1
R:R:E37 R:R:L80 14.58 1 No Yes 7 8 2 2
R:R:E37 R:R:Y284 16.83 1 No Yes 7 7 2 1
R:R:L76 R:R:Y284 3.52 0 No Yes 7 7 2 1
R:R:C79 R:R:L107 11.11 0 No No 6 6 2 1
R:R:L80 R:R:Y284 3.52 1 Yes Yes 8 7 2 1
R:R:W91 R:R:Y87 9.65 1 Yes Yes 4 6 2 2
R:R:F277 R:R:Y87 5.16 1 Yes Yes 5 6 1 2
R:R:F277 R:R:W91 6.01 1 Yes Yes 5 4 1 2
R:R:L107 R:R:Y284 3.52 1 No Yes 6 7 1 1
R:R:E196 R:R:R111 3.49 0 No No 5 8 2 1
R:R:R111 R:R:T283 9.06 0 No Yes 8 8 1 2
R:R:F180 R:R:S179 9.25 1 Yes No 3 4 1 1
R:R:H189 R:R:S179 6.97 1 No No 5 4 2 1
R:R:F180 R:R:H189 9.05 1 Yes No 3 5 1 2
R:R:F180 R:R:F193 5.36 1 Yes No 3 6 1 2
R:R:F180 R:R:F276 13.93 1 Yes Yes 3 4 1 2
R:R:F180 R:R:L280 3.65 1 Yes Yes 3 5 1 1
R:R:D273 R:R:F277 7.17 0 No Yes 4 5 2 1
R:R:F276 R:R:F277 5.36 1 Yes Yes 4 5 2 1
R:R:F276 R:R:L280 6.09 1 Yes Yes 4 5 2 1
R:R:L280 R:R:T283 5.9 1 Yes Yes 5 8 1 2
R:R:L280 R:R:Y284 3.52 1 Yes Yes 5 7 1 1
R:R:T283 R:R:Y284 4.99 1 Yes Yes 8 7 2 1

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8IY9_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 3.39
Number of Linked Nodes 277
Number of Links 313
Number of Hubs 38
Number of Links mediated by Hubs 148
Number of Communities 7
Number of Nodes involved in Communities 55
Number of Links involved in Communities 79
Path Summary
Number Of Nodes in MetaPath 81
Number Of Links MetaPath 80
Number of Shortest Paths 56438
Length Of Smallest Path 3
Average Path Length 12.9983
Length of Longest Path 34
Minimum Path Strength 1.53
Average Path Strength 6.02112
Maximum Path Strength 15.545
Minimum Path Correlation 0.7
Average Path Correlation 0.929497
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 52.6417
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 42.961
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• phosphorus-oxygen lyase activity   • enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • cyclase activity   • adenylate cyclase regulator activity   • lyase activity   • catalytic activity   • adenylate cyclase activity   • mu-type opioid receptor binding   • protein binding   • binding   • signaling receptor binding   • G protein-coupled receptor binding   • opioid receptor binding   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • peptide hormone receptor binding   • corticotropin-releasing hormone receptor binding   • corticotropin-releasing hormone receptor 1 binding   • hormone receptor binding   • neuropeptide receptor binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • cation binding   • metal ion binding   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • cell communication   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • heart process   • multicellular organismal process   • system process   • regulation of heart contraction   • regulation of system process   • circulatory system process   • regulation of blood circulation   • regulation of multicellular organismal process   • heart contraction   • blood circulation   • behavior   • locomotory behavior   • transport   • secretion   • export from cell   • membrane docking   • establishment of localization   • vesicle-mediated transport   • localization   • organelle localization by membrane tethering   • secretion by cell   • exocytosis   • organelle localization   • vesicle docking   • exocytic process   • vesicle docking involved in exocytosis   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to oxygen-containing compound   • response to nitrogen compound   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • protein localization   • negative regulation of protein transport   • regulation of localization   • establishment of protein localization   • nitrogen compound transport   • negative regulation of biological process   • negative regulation of transport   • negative regulation of secretion   • cellular macromolecule localization   • negative regulation of hormone secretion   • negative regulation of secretion by cell   • regulation of biological quality   • regulation of peptide hormone secretion   • negative regulation of peptide hormone secretion   • regulation of hormone levels   • establishment of protein localization to extracellular region   • negative regulation of establishment of protein localization   • protein secretion   • regulation of protein secretion   • regulation of secretion   • negative regulation of protein secretion   • cellular localization   • regulation of hormone secretion   • regulation of protein localization   • regulation of peptide secretion   • negative regulation of signaling   • hormone secretion   • negative regulation of cell communication   • protein localization to extracellular region   • negative regulation of peptide secretion   • peptide secretion   • regulation of secretion by cell   • amide transport   • signal release   • negative regulation of cellular process   • negative regulation of protein localization   • regulation of signaling   • regulation of transport   • regulation of peptide transport   • regulation of establishment of protein localization   • cell-cell signaling   • regulation of protein transport   • peptide transport   • negative regulation of insulin secretion   • protein transport   • regulation of cellular localization   • regulation of insulin secretion   • peptide hormone secretion   • macromolecule localization   • hormone transport   • regulation of cell communication   • insulin secretion   • trans-synaptic signaling   • modulation of chemical synaptic transmission   • chemical synaptic transmission   • synaptic signaling   • regulation of trans-synaptic signaling   • anterograde trans-synaptic signaling   • postsynaptic modulation of chemical synaptic transmission   • muscle contraction   • muscle system process   • cell periphery   • postsynapse   • cellular anatomical structure   • postsynaptic membrane   • synapse   • cell junction   • membrane   • plasma membrane   • plasma membrane region   • synaptic membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex
Gene OntologyCellular Component• cell periphery   • postsynapse   • cellular anatomical structure   • postsynaptic membrane   • synapse   • cell junction   • membrane   • plasma membrane   • plasma membrane region   • synaptic membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • parallel fiber to Purkinje cell synapse   • excitatory synapse   • presynapse   • presynaptic membrane   • somatodendritic compartment   • cell projection   • dendrite   • dendritic tree   • neuron projection   • plasma membrane bounded cell projection   • intracellular anatomical structure   • cytoplasm   • GABA-ergic synapse   • glutamatergic synapse   • cell body   • protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • signal transduction   • cell communication   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • photoreceptor disc membrane   • photoreceptor outer segment   • photoreceptor cell cilium   • organelle membrane   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • G-protein beta-subunit binding   • fibroblast proliferation   • neurotransmitter receptor activity   • G protein-coupled amine receptor activity   • G protein-coupled acetylcholine receptor activity   • postsynaptic neurotransmitter receptor activity   • molecular transducer activity   • G protein-coupled receptor activity   • signaling receptor activity   • transmembrane signaling receptor activity   • G protein-coupled neurotransmitter receptor activity   • acetylcholine receptor activity   • nicotinic acid receptor activity   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • adenylate cyclase-inhibiting G protein-coupled acetylcholine receptor signaling pathway   • cell surface receptor signaling pathway   • trans-synaptic signaling   • anterograde trans-synaptic signaling   • chemical synaptic transmission   • regulation of locomotion   • locomotion   • G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger   • myeloid cell apoptotic process   • homeostatic process   • leukocyte apoptotic process   • cell death   • neutrophil homeostasis   • neutrophil apoptotic process   • multicellular organismal-level homeostasis   • leukocyte homeostasis   • immune system process   • inflammatory cell apoptotic process   • homeostasis of number of cells   • apoptotic process   • myeloid cell homeostasis   • programmed cell death   • protein localization   • positive regulation of cell communication   • regulation of localization   • establishment of protein localization   • nitrogen compound transport   • regulation of adiponectin secretion   • positive regulation of establishment of protein localization   • positive regulation of adiponectin secretion   • localization   • adiponectin secretion   • cellular macromolecule localization   • regulation of biological quality   • regulation of hormone levels   • establishment of protein localization to extracellular region   • protein secretion   • establishment of localization   • regulation of protein secretion   • regulation of secretion   • endocrine hormone secretion   • positive regulation of protein localization   • positive regulation of multicellular organismal process   • cellular localization   • regulation of hormone secretion   • regulation of protein localization   • transport   • positive regulation of biological process   • positive regulation of secretion by cell   • hormone secretion   • protein localization to extracellular region   • positive regulation of protein transport   • secretion by cell   • regulation of secretion by cell   • positive regulation of hormone secretion   • positive regulation of secretion   • signal release   • regulation of multicellular organismal process   • positive regulation of cellular process   • regulation of signaling   • secretion   • regulation of transport   • regulation of establishment of protein localization   • export from cell   • regulation of protein transport   • positive regulation of protein secretion   • endocrine process   • positive regulation of transport   • protein transport   • regulation of cellular localization   • macromolecule localization   • hormone transport   • regulation of cell communication   • positive regulation of signaling   • regulation of programmed cell death   • regulation of neutrophil apoptotic process   • positive regulation of myeloid cell apoptotic process   • positive regulation of neutrophil apoptotic process   • regulation of immune system process   • positive regulation of leukocyte apoptotic process   • positive regulation of immune system process   • regulation of leukocyte apoptotic process   • positive regulation of programmed cell death   • regulation of apoptotic process   • positive regulation of apoptotic process   • regulation of myeloid cell apoptotic process   • negative regulation of catabolic process   • lipid catabolic process   • catabolic process   • regulation of lipid metabolic process   • negative regulation of metabolic process   • negative regulation of biological process   • primary metabolic process   • regulation of catabolic process   • regulation of lipid catabolic process   • regulation of primary metabolic process   • negative regulation of cellular process   • metabolic process   • regulation of metabolic process   • negative regulation of lipid metabolic process   • negative regulation of lipid catabolic process   • lipid metabolic process
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNIO
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeNIO
NameNiacin
Synonyms3-carboxypyridine
Identifier
FormulaC6 H5 N O2
Molecular Weight123.109
SMILES
PubChem938
Formal Charge0
Total Atoms14
Total Chiral Atoms0
Total Bonds14
Total Aromatic Bonds6

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ8TDS4
Sequence
>8IY9_nogp_Chain_R
DHFLEIDKK NCCVFRDDF IVKVLPPVL GLEFIFGLL GNGLALWIF 
CFHLKSWKS SRIFLFNLA VADFLLIIC LPFLMDNYV RRWDWKFGD 
IPCRLMLFM LAMNRQGSI IFLTVVAVD RYFRVVHPH HALNKISNR 
TAAIISCLL WGITIGLTV HLLKKKMPI QNGGANLCS SFSICHTFQ 
WHEAMFLLE FFLPLGIIL FCSARIIWS LRQRQMDRH AKIKRAITF 
IMVVAIVFV ICFLPSVVV RIRIFWLLH TSGTQNCEV YRSVDLAFF 
ITLSFTYMN SMLDPVVYY FSSPSFPNF


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8J6LAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Gi1/β1/γ23.052024-04-0310.1016/j.celrep.2023.113406
8J6L (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-3.052024-04-0310.1016/j.celrep.2023.113406
8J6IAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ22.922024-04-0310.1016/j.celrep.2023.113406
8J6I (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-2.922024-04-0310.1016/j.celrep.2023.113406
8JHNAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMMF-Go/β1/γ23.752024-03-0610.1038/s41467-024-46239-2
8JHN (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMMF-3.752024-03-0610.1038/s41467-024-46239-2
8JERAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-Go/β1/γ23.452024-03-0610.1038/s41467-024-46239-2
8JER (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-3.452024-03-0610.1038/s41467-024-46239-2
8IYWAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-Go/β1/γ23.452024-03-0610.1038/s41467-024-46239-2
8IYW (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-3.452024-03-0610.1038/s41467-024-46239-2
8IYHAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Go/β1/γ23.32024-03-0610.1038/s41467-024-46239-2
8IYH (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-3.32024-03-0610.1038/s41467-024-46239-2
8IY9AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Go/β1/γ23.372024-03-0610.1038/s41467-024-46239-2
8IY9 (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-3.372024-03-0610.1038/s41467-024-46239-2
8I7WAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-Gi1/β1/γ23.392024-02-0710.1038/s41467-023-42764-8
8I7W (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-3.392024-02-0710.1038/s41467-023-42764-8
8I7VAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-Gi1/β1/γ22.772024-02-0710.1038/s41467-023-42764-8
8I7V (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-2.772024-02-0710.1038/s41467-023-42764-8
8J6JAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-Gi1/β1/γ22.82024-01-1010.1016/j.celrep.2023.113406
8J6J (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-2.82024-01-1010.1016/j.celrep.2023.113406
8IJDAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ23.252024-01-0310.1038/s41421-023-00610-7
8IJD (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-3.252024-01-0310.1038/s41421-023-00610-7
8IJBAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-Gi1/β1/γ23.232024-01-0310.1038/s41421-023-00610-7
8IJB (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-3.232024-01-0310.1038/s41421-023-00610-7
8IJAAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Gi1/β1/γ22.692024-01-0310.1038/s41421-023-00610-7
8IJA (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-2.692024-01-0310.1038/s41421-023-00610-7
8IJ3AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens--Gi1/β1/γ23.282024-01-0310.1038/s41421-023-00610-7
8IJ3 (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens--3.282024-01-0310.1038/s41421-023-00610-7
8J6RAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ22.762023-12-0610.1038/s41467-023-43537-z
8J6R (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-2.762023-12-0610.1038/s41467-023-43537-z
8J6QAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensβ-HydroxybutyrateCompound 9nGi1/β1/γ22.62023-12-0610.1038/s41467-023-43537-z
8J6Q (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensβ-HydroxybutyrateCompound 9n2.62023-12-0610.1038/s41467-023-43537-z
8J6PAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacinCompound 9nGi1/β1/γ22.552023-12-0610.1038/s41467-023-43537-z
8J6P (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacinCompound 9n2.552023-12-0610.1038/s41467-023-43537-z
8K5DAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073--3.742023-11-2210.1038/s41467-023-42764-8
8K5CAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox--3.132023-11-2210.1038/s41467-023-42764-8
8K5BAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin--3.432023-11-2210.1038/s41467-023-42764-8
8H2GAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Gi1/β1/γ23.012023-10-11To be published
8H2G (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-3.012023-10-11To be published
8JZ7AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ22.62023-10-0410.1038/s41392-023-01625-y
8JZ7 (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-2.62023-10-0410.1038/s41392-023-01625-y
8IHBAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-Gi1/β1/γ22.852023-09-1310.1038/s41467-023-41650-7
8IHB (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-2.852023-09-1310.1038/s41467-023-41650-7
8JIMAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMMF-Gi1/β1/γ22.982023-09-0610.1016/j.molcel.2023.07.030
8JIM (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMMF-2.982023-09-0610.1016/j.molcel.2023.07.030
8JILAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Gi1/β1/γ23.52023-09-0610.1016/j.molcel.2023.07.030
8JIL (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-3.52023-09-0610.1016/j.molcel.2023.07.030
8JIIAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacinCompound 9nGi1/β1/γ23.172023-09-0610.1016/j.molcel.2023.07.030
8JII (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacinCompound 9n3.172023-09-0610.1016/j.molcel.2023.07.030
8JHYAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens-Compound 9nGi1/β1/γ22.872023-09-0610.1016/j.molcel.2023.07.030
8JHY (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens-Compound 9n2.872023-09-0610.1016/j.molcel.2023.07.030
8IHIAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcifran-Gi1/β1/γ23.112023-08-3010.1038/s41467-023-41650-7
8IHI (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcifran-3.112023-08-3010.1038/s41467-023-41650-7
8IHHAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensLUF6283-Gi1/β1/γ23.062023-08-3010.1038/s41467-023-41650-7
8IHH (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensLUF6283-3.062023-08-3010.1038/s41467-023-41650-7
8IHFAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ22.972023-08-3010.1038/s41467-023-41650-7
8IHF (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-2.972023-08-3010.1038/s41467-023-41650-7
7ZLYAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens---2.72023-04-1210.1038/s41467-023-37177-6
7ZL9AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens---2.72023-04-1210.1038/s41467-023-37177-6
7XK2AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ23.12023-02-2210.1038/s41467-023-37177-6
7XK2 (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-3.12023-02-2210.1038/s41467-023-37177-6
8UUJAAlicarboxylic acidHydroxycarboxylic AcidHCA2Mus musculusFCH-2296413-Gi1/β1/γ22.622025-02-2610.1016/j.cell.2024.11.001
8UUJ (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Mus musculusFCH-2296413-2.622025-02-2610.1016/j.cell.2024.11.001
8UTDAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK1903-Gi1/β1/γ23.242025-02-2610.1016/j.cell.2024.11.001
8UTD (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK1903-3.242025-02-2610.1016/j.cell.2024.11.001
9IQTAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensNiacin-Gi1/β1/γ22.92024-10-02doi.org/10.1016/j.jmb.2024.168795
9IQT (No Gprot) AAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensNiacin-2.92024-10-02doi.org/10.1016/j.jmb.2024.168795




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8IY9_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.