Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1L:L:?1 6.61810
2R:R:F21 6.11432
3R:R:L30 5.005415
4R:R:E37 3.9475417
5R:R:I64 2.4525407
6R:R:Y87 6.904516
7R:R:W91 6.3325404
8R:R:W93 5.488529
9R:R:F95 7.05427
10R:R:C100 5.675429
11R:R:F105 6.2525446
12R:R:M109 3.925645
13R:R:N110 5.1775449
14R:R:R111 4.8675418
15R:R:Y126 6.50333657
16R:R:H131 5.2975457
17R:R:F180 6.02613
18R:R:I182 5.135413
19R:R:C183 4.63461
20R:R:H189 5.18405
21R:R:E190 6.502514
22R:R:F197 5.11408
23R:R:I204 1.9575408
24R:R:I212 3.51405
25R:R:F244 6.126588
26R:R:L245 3.595406
27R:R:L258 5.305413
28R:R:R270 8.015431
29R:R:F276 10.15414
30R:R:S281 3.415416
31R:R:Y284 4.405417
32R:R:Y294 4.53409
33R:R:Y295 3.75571707
34W:W:?1 6.185810
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1L:L:?1 R:R:Y87 33.44254.35YesYes106
2R:R:I26 R:R:Y87 29.99946.04NoYes156
3R:R:I26 R:R:L274 29.75532.85NoNo051
4R:R:D23 R:R:L274 29.5242.71NoNo041
5R:R:D23 R:R:R270 27.481210.72NoYes041
6R:R:F21 R:R:R270 19.30375.34YesYes321
7L:L:?1 R:R:L83 51.23666.42YesNo106
8R:R:L83 R:R:M103 56.0485.65NoNo065
9R:R:M103 R:R:W93 54.66693.49NoYes059
10R:R:F95 R:R:W93 46.103910.02YesYes279
11R:R:F95 R:R:K94 38.02279.93YesNo073
12R:R:K94 R:R:R89 34.451112.38NoNo034
13R:R:D92 R:R:R89 23.42782.38NoNo044
14R:R:A174 R:R:D92 21.54563.09NoNo024
15R:R:A174 R:R:R22 19.65054.15NoNo023
16R:R:N171 R:R:R22 11.94192.41NoNo013
17L:L:?1 R:R:F180 61.66259.03YesYes103
18R:R:E190 R:R:F180 40.42537YesYes143
19R:R:E190 R:R:Q187 10.40663.82YesNo042
20R:R:L30 R:R:Y87 11.2617.03YesYes156
21L:L:?1 R:R:Y284 29.02296.52YesYes107
22R:R:E37 R:R:Y284 23.36354.49YesYes177
23R:R:E37 R:R:M285 20.55632.71YesNo075
24R:R:L80 R:R:Y284 16.41293.52NoYes087
25R:R:F38 R:R:L80 14.63992.44NoNo078
26R:R:F38 R:R:I77 11.05542.51NoNo076
27L:L:?1 R:R:L107 1006.42YesNo006
28R:R:L107 R:R:L76 98.96582.77NoNo067
29R:R:L76 R:R:S287 70.28973NoNo078
30R:R:D73 R:R:S287 68.93432.94NoNo098
31R:R:D73 R:R:N45 67.56614.81NoNo099
32R:R:N45 R:R:P291 63.38416.52NoNo099
33R:R:F296 R:R:P291 13.07891.44NoNo089
34R:R:F296 R:R:L47 11.24821.22NoNo086
35R:R:P291 R:R:Y295 51.6674.17NoYes097
36R:R:F52 R:R:Y295 24.44923.09NoYes077
37R:R:F52 R:R:F67 22.95247.5NoNo076
38R:R:F67 R:R:W59 17.99323.01NoNo066
39R:R:I64 R:R:W59 16.75983.52YesNo076
40R:R:A144 R:R:I64 11.28673.25NoYes077
41L:L:?1 R:R:R111 69.18489.01YesYes108
42R:R:E196 R:R:R111 60.90453.49NoYes058
43R:R:E196 R:R:I115 59.83816.83NoNo058
44R:R:I115 R:R:P200 69.10773.39NoNo089
45R:R:P200 R:R:T119 66.56393.5NoNo097
46R:R:I203 R:R:T119 48.77634.56NoNo077
47R:R:C207 R:R:I203 47.3181.64NoNo087
48R:R:C207 R:R:Y126 45.8478.06NoYes087
49R:R:H131 R:R:Y126 20.68485.44YesYes577
50R:R:F127 R:R:H131 15.80274.53NoYes057
51R:R:F127 R:R:L136 12.33383.65NoNo054
52R:R:H134 R:R:L136 10.58012.57NoNo044
53R:R:L76 R:R:N110 40.62446.87NoYes079
54R:R:M109 R:R:N110 33.80232.8YesYes459
55R:R:M109 R:R:T155 23.79391.51YesNo057
56R:R:I116 R:R:T155 20.27374.56NoNo057
57R:R:I116 R:R:L151 16.7025.71NoNo057
58R:R:F117 R:R:L151 14.89694.87NoNo087
59R:R:W91 R:R:Y87 14.01047.72YesYes046
60R:R:N86 R:R:W91 12.68715.65NoYes054
61R:R:C100 R:R:W93 17.37656.53YesYes299
62R:R:R111 R:R:T283 17.47293.88YesNo088
63L:L:?1 R:R:S179 15.32732.78YesNo004
64R:R:H189 R:R:S179 14.03618.37YesNo054
65R:R:H189 R:R:M192 24.66112.63YesNo055
66R:R:F180 R:R:H189 17.09396.79YesYes035
67R:R:F244 R:R:T283 16.52865.19YesNo088
68R:R:I204 R:R:T119 21.11523.04YesNo087
69R:R:I211 R:R:Y126 14.09393.63NoYes087
70R:R:I211 R:R:V129 12.35316.14NoNo088
71R:R:M192 R:R:W188 18.35299.31NoNo055
72R:R:H161 R:R:W188 12.17963.17NoNo075
73R:R:E190 W:W:?1 28.11727.72YesYes140
74R:R:L258 W:W:?1 17.31877.06YesYes130
75R:R:I254 R:R:L258 12.90552.85NoYes143
76R:R:F240 R:R:F244 22.62484.29NoYes098
77R:R:F197 R:R:F240 17.97396.43YesNo089
78R:R:F198 W:W:?1 17.72343.55NoYes050
79R:R:F197 R:R:F198 16.84976.43YesNo085
80R:R:F197 R:R:L245 13.13033.65YesYes086
81R:R:I204 R:R:S208 16.00821.55YesNo088
82R:R:I233 R:R:S208 14.28023.1NoNo078
83R:R:I212 R:R:I233 12.52652.94YesNo057
84R:R:L215 R:R:V129 10.59291.49NoNo088
85R:R:L289 R:R:M285 18.69984.24NoNo075
86R:R:L289 R:R:V292 14.94831.49NoNo076
87R:R:V292 R:R:V293 13.05331.6NoNo068
88R:R:I254 R:R:V272 15.71913.07NoNo044
89R:R:L257 R:R:V272 12.31452.98NoNo034
90R:R:F277 R:R:W91 11.58227.02NoYes054
91R:R:R111 R:R:Y284 10.07263.09YesYes187
92R:R:F244 R:R:I115 10.70866.28YesNo088
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
L:L:?1 R:R:L83 6.42 1 Yes No 0 6 0 1
L:L:?1 R:R:Y87 4.35 1 Yes Yes 0 6 0 1
L:L:?1 R:R:L107 6.42 1 Yes No 0 6 0 1
L:L:?1 R:R:R111 9.01 1 Yes Yes 0 8 0 1
L:L:?1 R:R:S178 8.35 1 Yes No 0 4 0 1
L:L:?1 R:R:S179 2.78 1 Yes No 0 4 0 1
L:L:?1 R:R:F180 9.03 1 Yes Yes 0 3 0 1
L:L:?1 R:R:Y284 6.52 1 Yes Yes 0 7 0 1
R:R:I26 R:R:L30 7.14 1 No Yes 5 5 2 2
R:R:I26 R:R:Y87 6.04 1 No Yes 5 6 2 1
R:R:L30 R:R:Y87 7.03 1 Yes Yes 5 6 2 1
R:R:E37 R:R:Y284 4.49 1 Yes Yes 7 7 2 1
R:R:L107 R:R:L76 2.77 0 No No 6 7 1 2
R:R:L80 R:R:Y284 3.52 0 No Yes 8 7 2 1
R:R:L83 R:R:Y87 9.38 1 No Yes 6 6 1 1
R:R:L83 R:R:M103 5.65 1 No No 6 5 1 2
R:R:W91 R:R:Y87 7.72 0 Yes Yes 4 6 2 1
R:R:S178 R:R:W91 4.94 0 No Yes 4 4 1 2
R:R:E196 R:R:R111 3.49 0 No Yes 5 8 2 1
R:R:R111 R:R:T283 3.88 1 Yes No 8 8 1 2
R:R:R111 R:R:Y284 3.09 1 Yes Yes 8 7 1 1
R:R:H189 R:R:S179 8.37 0 Yes No 5 4 2 1
R:R:F180 R:R:H189 6.79 1 Yes Yes 3 5 1 2
R:R:E190 R:R:F180 7 1 Yes Yes 4 3 2 1
R:R:F180 R:R:F193 3.22 1 Yes No 3 6 1 2
R:R:F180 R:R:F276 6.43 1 Yes Yes 3 4 1 2
R:R:F180 R:R:L280 3.65 1 Yes No 3 5 1 2
R:R:F276 R:R:L280 9.74 1 Yes No 4 5 2 2

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

2D representation of the interactions of this orthosteric/allosteric ligand.


Links and nodes colored according to ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Node1 Node2 LinkStrength Comm IsNode1Hub? IsNode2Hub? Node1Cons Node2Cons Node1Shell Node2Shell
R:R:E190 R:R:F180 7 1 Yes Yes 4 3 1 2
R:R:I182 R:R:I254 4.42 1 Yes No 3 4 2 2
R:R:I182 R:R:L258 4.28 1 Yes Yes 3 3 2 1
R:R:I182 R:R:Y269 4.84 1 Yes No 3 2 2 2
R:R:F186 W:W:?1 5.32 0 No Yes 4 0 1 0
R:R:E190 R:R:Q187 3.82 1 Yes No 4 2 1 2
R:R:E190 R:R:R251 10.47 1 Yes No 4 5 1 2
R:R:E190 R:R:F255 3.5 1 Yes No 4 5 1 1
R:R:E190 W:W:?1 7.72 1 Yes Yes 4 0 1 0
R:R:A191 W:W:?1 4.59 0 No Yes 3 0 1 0
R:R:I252 R:R:L194 2.85 0 No No 6 4 2 1
R:R:F255 R:R:L194 3.65 1 No No 5 4 1 1
R:R:L194 W:W:?1 3.02 1 No Yes 4 0 1 0
R:R:L195 W:W:?1 4.03 0 No Yes 4 0 1 0
R:R:F197 R:R:F198 6.43 0 Yes No 8 5 2 1
R:R:F198 W:W:?1 3.55 0 No Yes 5 0 1 0
R:R:I254 R:R:L258 2.85 1 No Yes 4 3 2 1
R:R:F255 W:W:?1 14.19 1 No Yes 5 0 1 0
R:R:L258 R:R:Y269 7.03 1 Yes No 3 2 1 2
R:R:L258 W:W:?1 7.06 1 Yes Yes 3 0 1 0

Location and physicochemical properties of the interaction partners of this ligand

Interactions of this ligand

Similarities between the interactions of this ligand and those of other networks

PDB Summary
PDB 8JII_nogp
Class
SubFamily
Type
SubType
Species
Ligand
Other Ligand(s)
Protein Partners
PDB Resolution
Date
D.O.I.
Net Summary
Imin 2.71
Number of Linked Nodes 275
Number of Links 304
Number of Hubs 34
Number of Links mediated by Hubs 133
Number of Communities 8
Number of Nodes involved in Communities 51
Number of Links involved in Communities 64
Path Summary
Number Of Nodes in MetaPath 93
Number Of Links MetaPath 92
Number of Shortest Paths 41955
Length Of Smallest Path 3
Average Path Length 13.3884
Length of Longest Path 34
Minimum Path Strength 1.21
Average Path Strength 5.23639
Maximum Path Strength 14.855
Minimum Path Correlation 0.7
Average Path Correlation 0.916432
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.7037
Average % Of Corr. Nodes 46.7094
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 34.4321
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function• protein binding   • binding   • enzyme binding   • GTPase binding   • protein-containing complex binding   • pyrophosphatase activity   • GTPase activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • catalytic activity   • signaling receptor complex adaptor activity   • protein-macromolecule adaptor activity   • molecular adaptor activity   • signaling adaptor activity   • multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development
Gene OntologyBiological Process• multicellular organismal process   • system process   • sensory perception of chemical stimulus   • sensory perception   • nervous system process   • sensory perception of taste   • developmental process   • sensory organ development   • eye development   • animal organ development   • retina development in camera-type eye   • visual system development   • multicellular organism development   • camera-type eye development   • anatomical structure development   • sensory system development   • system development   • cell population proliferation   • cellular process   • cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • signal transduction   • cell communication   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • response to oxygen-containing compound   • cellular response to oxygen-containing compound   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to chemical stimulus   • cellular response to alcohol   • response to hormone   • response to chemical   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • small GTPase-mediated signal transduction   • Ras protein signal transduction   • intracellular signal transduction   • intracellular signaling cassette   • phospholipase C-activating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular response to nitrogen compound   • response to dopamine   • cellular response to dopamine   • response to monoamine   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • G protein-coupled dopamine receptor signaling pathway   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to monoamine stimulus   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • synaptic signaling   • cellular response to acetylcholine   • cell-cell signaling   • acetylcholine receptor signaling pathway   • postsynaptic signal transduction   • G protein-coupled acetylcholine receptor signaling pathway   • response to acetylcholine   • cellular anatomical structure   • membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cell periphery   • cytoplasmic side of plasma membrane   • GTPase complex
Gene OntologyCellular Component• cellular anatomical structure   • membrane   • protein-containing complex   • extrinsic component of plasma membrane   • catalytic complex   • plasma membrane protein complex   • cytoplasmic side of membrane   • plasma membrane   • membrane protein complex   • heterotrimeric G-protein complex   • side of membrane   • cell periphery   • cytoplasmic side of plasma membrane   • GTPase complex   • extrinsic component of membrane   • extrinsic component of cytoplasmic side of plasma membrane   • extracellular exosome   • membrane-bounded organelle   • extracellular vesicle   • extracellular organelle   • extracellular region   • organelle   • extracellular space   • vesicle   • extracellular membrane-bounded organelle   • non-motile cilium   • 9+0 non-motile cilium   • cilium   • neuron projection   • photoreceptor disc membrane   • photoreceptor outer segment   • plasma membrane bounded cell projection   • cell projection   • photoreceptor cell cilium   • organelle membrane   • intracellular anatomical structure   • cytoplasm   • cytosol   • vacuolar membrane   • lytic vacuole   • vacuole   • intracellular membrane-bounded organelle   • intracellular organelle   • lytic vacuole membrane   • bounding membrane of organelle   • lysosomal membrane   • lysosome   • synapse   • cell junction   • protein binding   • binding   • G-protein beta-subunit binding   • fibroblast proliferation   • cell population proliferation   • cellular process   • cellular response to nitrogen compound   • cellular response to stimulus   • response to dopamine   • regulation of cellular process   • response to stimulus   • signaling   • cellular response to dopamine   • response to monoamine   • cell communication   • response to catecholamine   • adenylate cyclase-activating dopamine receptor signaling pathway   • cellular response to catecholamine stimulus   • signal transduction   • regulation of biological process   • G protein-coupled dopamine receptor signaling pathway   • biological regulation   • response to oxygen-containing compound   • response to nitrogen compound   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cellular response to oxygen-containing compound   • cellular response to chemical stimulus   • cellular response to monoamine stimulus   • response to chemical   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • response to ketone   • response to prostaglandin   • response to lipid   • response to endogenous stimulus   • response to alcohol   • cellular response to prostaglandin stimulus   • cellular response to endogenous stimulus   • cellular response to prostaglandin E stimulus   • cellular response to alcohol   • response to hormone   • cellular response to lipid   • response to prostaglandin E   • cellular response to ketone   • cellular response to hormone stimulus   • D2 dopamine receptor binding   • signaling receptor binding   • G protein-coupled receptor binding   • dopamine receptor binding   • phosphorus-oxygen lyase activity   • enzyme regulator activity   • cyclase regulator activity   • molecular function regulator activity   • cyclase activity   • adenylate cyclase regulator activity   • lyase activity   • catalytic activity   • adenylate cyclase activity   • guanyl nucleotide binding   • GTP binding   • nucleotide binding   • guanyl ribonucleotide binding   • purine ribonucleotide binding   • purine ribonucleoside triphosphate binding   • nucleoside phosphate binding   • ion binding   • purine nucleotide binding   • anion binding   • heterocyclic compound binding   • carbohydrate derivative binding   • ribonucleotide binding   • small molecule binding   • cation binding   • magnesium ion binding   • metal ion binding   • GDP binding   • G protein-coupled serotonin receptor binding   • protein-containing complex binding   • G-protein beta/gamma-subunit complex binding   • pyrophosphatase activity   • GTPase activity   • G protein activity   • ribonucleoside triphosphate phosphatase activity   • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides   • hydrolase activity   • hydrolase activity, acting on acid anhydrides   • adenylate cyclase-inhibiting serotonin receptor signaling pathway   • G protein-coupled serotonin receptor signaling pathway   • adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway   • response to peptide hormone   • cell division   • leukocyte migration   • immune system process   • mononuclear cell migration   • lymphocyte migration   • cell migration   • T cell migration   • cell motility   • regulation of steroid biosynthetic process   • regulation of cholesterol biosynthetic process   • regulation of cholesterol metabolic process   • steroid metabolic process   • regulation of lipid metabolic process   • sterol metabolic process   • positive regulation of biological process   • cholesterol metabolic process   • lipid biosynthetic process   • alcohol metabolic process   • regulation of primary metabolic process   • positive regulation of metabolic process   • regulation of small molecule metabolic process   • positive regulation of biosynthetic process   • positive regulation of lipid metabolic process   • small molecule metabolic process   • steroid biosynthetic process   • positive regulation of cellular process   • regulation of biosynthetic process   • secondary alcohol biosynthetic process   • regulation of alcohol biosynthetic process   • small molecule biosynthetic process   • regulation of steroid metabolic process   • cholesterol biosynthetic process   • positive regulation of cholesterol biosynthetic process   • primary metabolic process   • secondary alcohol metabolic process   • positive regulation of steroid biosynthetic process   • biosynthetic process   • sterol biosynthetic process   • positive regulation of lipid biosynthetic process   • regulation of sterol biosynthetic process   • alcohol biosynthetic process   • positive regulation of cholesterol metabolic process   • positive regulation of steroid metabolic process   • metabolic process   • regulation of lipid biosynthetic process   • positive regulation of small molecule metabolic process   • regulation of metabolic process   • positive regulation of alcohol biosynthetic process   • positive regulation of sterol biosynthetic process   • lipid metabolic process   • regulation of cytoskeleton organization   • regulation of cellular component organization   • microtubule cytoskeleton organization   • regulation of mitotic spindle organization   • mitotic cell cycle   • cellular component organization   • cell cycle   • cellular component organization or biogenesis   • regulation of cell cycle   • microtubule cytoskeleton organization involved in mitosis   • spindle organization   • cell cycle process   • regulation of cell cycle process   • regulation of microtubule-based process   • regulation of spindle organization   • regulation of organelle organization   • mitotic spindle organization   • organelle organization   • mitotic cell cycle process   • microtubule-based process   • cytoskeleton organization   • regulation of microtubule cytoskeleton organization   • protein localization   • positive regulation of protein localization to cell periphery   • regulation of localization   • protein localization to cell periphery   • cellular localization   • regulation of protein localization   • positive regulation of protein localization to cell cortex   • regulation of protein localization to cell periphery   • localization   • regulation of cellular localization   • regulation of protein localization to cell cortex   • cellular macromolecule localization   • macromolecule localization   • positive regulation of protein localization   • protein localization to cell cortex   • cellular response to forskolin   • response to forskolin   • midbody   • nucleus   • membrane-enclosed lumen   • intracellular membraneless organelle   • nucleolus   • intracellular organelle lumen   • organelle lumen   • membraneless organelle   • nuclear lumen   • cell cortex   • centrosome   • microtubule organizing center   • cytoskeleton   • microtubule cytoskeleton   • centriolar satellite   • nucleoplasm   • Golgi apparatus   • endomembrane system   • ciliary basal body   • molecular transducer activity   • G protein-coupled receptor activity   • transmembrane signaling receptor activity   • signaling receptor activity   • nicotinic acid receptor activity   • myeloid cell apoptotic process   • multicellular organismal process   • homeostatic process   • leukocyte apoptotic process   • cell death   • neutrophil homeostasis   • neutrophil apoptotic process   • multicellular organismal-level homeostasis   • leukocyte homeostasis   • inflammatory cell apoptotic process   • homeostasis of number of cells   • apoptotic process   • myeloid cell homeostasis   • programmed cell death   • positive regulation of cell communication   • establishment of protein localization   • system process   • nitrogen compound transport   • regulation of adiponectin secretion   • positive regulation of establishment of protein localization   • positive regulation of adiponectin secretion   • adiponectin secretion   • regulation of biological quality   • regulation of hormone levels   • establishment of protein localization to extracellular region   • protein secretion   • establishment of localization   • regulation of protein secretion   • regulation of secretion   • endocrine hormone secretion   • positive regulation of multicellular organismal process   • regulation of hormone secretion   • transport   • positive regulation of secretion by cell   • hormone secretion   • protein localization to extracellular region   • positive regulation of protein transport   • secretion by cell   • regulation of secretion by cell   • positive regulation of hormone secretion   • positive regulation of secretion   • signal release   • regulation of multicellular organismal process   • regulation of signaling   • secretion   • regulation of transport   • regulation of establishment of protein localization   • export from cell   • cell-cell signaling   • regulation of protein transport   • positive regulation of protein secretion   • endocrine process   • positive regulation of transport   • protein transport   • hormone transport   • regulation of cell communication   • positive regulation of signaling   • regulation of programmed cell death   • regulation of neutrophil apoptotic process   • positive regulation of myeloid cell apoptotic process   • positive regulation of neutrophil apoptotic process   • regulation of immune system process   • positive regulation of leukocyte apoptotic process   • positive regulation of immune system process   • regulation of leukocyte apoptotic process   • positive regulation of programmed cell death   • regulation of apoptotic process   • positive regulation of apoptotic process   • regulation of myeloid cell apoptotic process   • negative regulation of catabolic process   • lipid catabolic process   • catabolic process   • negative regulation of metabolic process   • negative regulation of biological process   • regulation of catabolic process   • regulation of lipid catabolic process   • negative regulation of cellular process   • negative regulation of lipid metabolic process   • negative regulation of lipid catabolic process
SCOP2Domain Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
SCOP2Family Identifier• Transducin (heterotrimeric G protein), gamma chain   • Ras-like P-loop GTPases
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
CodeNIO
PDB ResiduesL:L:?1
Environment DetailsOpen EMBL-EBI Page
CodeNIO
NameNiacin
Synonyms3-carboxypyridine
Identifier
FormulaC6 H5 N O2
Molecular Weight123.109
SMILES
PubChem938
Formal Charge0
Total Atoms14
Total Chiral Atoms0
Total Bonds14
Total Aromatic Bonds6

CodeIX8
PDB ResiduesW:W:?1
Environment DetailsOpen EMBL-EBI Page
CodeIX8
Name7-methyl-N-[(2R)-1-phenoxypropan-2-yl]-3-(4-propan-2-ylphenyl)pyrazolo[1,5-a]pyrimidine-6-carboxamide
Synonyms
Identifier
FormulaC26 H28 N4 O2
Molecular Weight428.526
SMILES
PubChem25101223
Formal Charge0
Total Atoms60
Total Chiral Atoms1
Total Bonds63
Total Aromatic Bonds22

PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ8TDS4
Sequence
>8JII_nogp_Chain_R
FLEIDKKNC CVFRDDFIV KVLPPVLGL EFIFGLLGN GLALWIFCF 
HLKSWKSSR IFLFNLAVA DFLLIICLP FLMDNYVRR WDWKFGDIP 
CRLMLFMLA MNRQGSIIF LTVVAVDRY FRVVHPHHA LNKISNRTA 
AIISCLLWG ITIGLTVHL LKKKMPIQN GGANLCSSF SICHTFQWH 
EAMFLLEFF LPLGIILFC SARIIWSLR QRQMDRHAK IKRAITFIM 
VVAIVFVIC FLPSVVVRI RIFWLLHTS GTQNCEVYR SVDLAFFIT 
LSFTYMNSM LDPVVYYFS S


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8J6LAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Gi1/β1/γ23.052024-04-0310.1016/j.celrep.2023.113406
8J6L (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-3.052024-04-0310.1016/j.celrep.2023.113406
8J6IAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ22.922024-04-0310.1016/j.celrep.2023.113406
8J6I (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-2.922024-04-0310.1016/j.celrep.2023.113406
8JHNAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMMF-Go/β1/γ23.752024-03-0610.1038/s41467-024-46239-2
8JHN (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMMF-3.752024-03-0610.1038/s41467-024-46239-2
8JERAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-Go/β1/γ23.452024-03-0610.1038/s41467-024-46239-2
8JER (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-3.452024-03-0610.1038/s41467-024-46239-2
8IYWAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-Go/β1/γ23.452024-03-0610.1038/s41467-024-46239-2
8IYW (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-3.452024-03-0610.1038/s41467-024-46239-2
8IYHAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Go/β1/γ23.32024-03-0610.1038/s41467-024-46239-2
8IYH (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-3.32024-03-0610.1038/s41467-024-46239-2
8IY9AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Go/β1/γ23.372024-03-0610.1038/s41467-024-46239-2
8IY9 (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-3.372024-03-0610.1038/s41467-024-46239-2
8I7WAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-Gi1/β1/γ23.392024-02-0710.1038/s41467-023-42764-8
8I7W (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-3.392024-02-0710.1038/s41467-023-42764-8
8I7VAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-Gi1/β1/γ22.772024-02-0710.1038/s41467-023-42764-8
8I7V (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-2.772024-02-0710.1038/s41467-023-42764-8
8J6JAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-Gi1/β1/γ22.82024-01-1010.1016/j.celrep.2023.113406
8J6J (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-2.82024-01-1010.1016/j.celrep.2023.113406
8IJDAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ23.252024-01-0310.1038/s41421-023-00610-7
8IJD (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-3.252024-01-0310.1038/s41421-023-00610-7
8IJBAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-Gi1/β1/γ23.232024-01-0310.1038/s41421-023-00610-7
8IJB (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox-3.232024-01-0310.1038/s41421-023-00610-7
8IJAAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Gi1/β1/γ22.692024-01-0310.1038/s41421-023-00610-7
8IJA (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-2.692024-01-0310.1038/s41421-023-00610-7
8IJ3AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens--Gi1/β1/γ23.282024-01-0310.1038/s41421-023-00610-7
8IJ3 (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens--3.282024-01-0310.1038/s41421-023-00610-7
8J6RAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ22.762023-12-0610.1038/s41467-023-43537-z
8J6R (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-2.762023-12-0610.1038/s41467-023-43537-z
8J6QAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensβ-HydroxybutyrateCompound 9nGi1/β1/γ22.62023-12-0610.1038/s41467-023-43537-z
8J6Q (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensβ-HydroxybutyrateCompound 9n2.62023-12-0610.1038/s41467-023-43537-z
8J6PAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacinCompound 9nGi1/β1/γ22.552023-12-0610.1038/s41467-023-43537-z
8J6P (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacinCompound 9n2.552023-12-0610.1038/s41467-023-43537-z
8K5DAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073--3.742023-11-2210.1038/s41467-023-42764-8
8K5CAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcipimox--3.132023-11-2210.1038/s41467-023-42764-8
8K5BAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin--3.432023-11-2210.1038/s41467-023-42764-8
8H2GAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Gi1/β1/γ23.012023-10-11To be published
8H2G (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-3.012023-10-11To be published
8JZ7AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ22.62023-10-0410.1038/s41392-023-01625-y
8JZ7 (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-2.62023-10-0410.1038/s41392-023-01625-y
8IHBAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-Gi1/β1/γ22.852023-09-1310.1038/s41467-023-41650-7
8IHB (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensGSK256073-2.852023-09-1310.1038/s41467-023-41650-7
8JIMAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMMF-Gi1/β1/γ22.982023-09-0610.1016/j.molcel.2023.07.030
8JIM (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMMF-2.982023-09-0610.1016/j.molcel.2023.07.030
8JILAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-Gi1/β1/γ23.52023-09-0610.1016/j.molcel.2023.07.030
8JIL (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacin-3.52023-09-0610.1016/j.molcel.2023.07.030
8JIIAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacinCompound 9nGi1/β1/γ23.172023-09-0610.1016/j.molcel.2023.07.030
8JII (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensNiacinCompound 9n3.172023-09-0610.1016/j.molcel.2023.07.030
8JHYAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens-Compound 9nGi1/β1/γ22.872023-09-0610.1016/j.molcel.2023.07.030
8JHY (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens-Compound 9n2.872023-09-0610.1016/j.molcel.2023.07.030
8IHIAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcifran-Gi1/β1/γ23.112023-08-3010.1038/s41467-023-41650-7
8IHI (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensAcifran-3.112023-08-3010.1038/s41467-023-41650-7
8IHHAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensLUF6283-Gi1/β1/γ23.062023-08-3010.1038/s41467-023-41650-7
8IHH (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensLUF6283-3.062023-08-3010.1038/s41467-023-41650-7
8IHFAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ22.972023-08-3010.1038/s41467-023-41650-7
8IHF (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-2.972023-08-3010.1038/s41467-023-41650-7
7ZLYAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens---2.72023-04-1210.1038/s41467-023-37177-6
7ZL9AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiens---2.72023-04-1210.1038/s41467-023-37177-6
7XK2AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-Gi1/β1/γ23.12023-02-2210.1038/s41467-023-37177-6
7XK2 (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK6892-3.12023-02-2210.1038/s41467-023-37177-6
8UUJAAlicarboxylic acidHydroxycarboxylic AcidHCA2Mus musculusFCH-2296413-Gi1/β1/γ22.622025-02-2610.1016/j.cell.2024.11.001
8UUJ (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Mus musculusFCH-2296413-2.622025-02-2610.1016/j.cell.2024.11.001
8UTDAAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK1903-Gi1/β1/γ23.242025-02-2610.1016/j.cell.2024.11.001
8UTD (No Gprot) AAlicarboxylic acidHydroxycarboxylic AcidHCA2Homo sapiensMK1903-3.242025-02-2610.1016/j.cell.2024.11.001
9IQTAAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensNiacin-Gi1/β1/γ22.92024-10-02doi.org/10.1016/j.jmb.2024.168795
9IQT (No Gprot) AAlicarboxylic acidHydroxycarboxylic acidHCA2Homo sapiensNiacin-2.92024-10-02doi.org/10.1016/j.jmb.2024.168795




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8JII_nogp.zip



You can click to copy the link of this page to easily come back here later

or use this QR code to link and share this page.



You can also  read or  download a guide explaining the meaning of all files and numerical data.