Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:N45 6.746539
2R:R:Y65 7.54768
3R:R:D73 5.698539
4R:R:V76 2.8825439
5R:R:M81 4.534519
6R:R:N84 5.38418
7R:R:K92 4.4475402
8R:R:Y108 5.5825429
9R:R:I115 3.795449
10R:R:I120 4.786568
11R:R:Q131 4.87754107
12R:R:T140 3.5775409
13R:R:W158 5.965408
14R:R:I162 3.825409
15R:R:D183 6.2225427
16R:R:F184 10.5429
17R:R:V187 4.785428
18R:R:F199 7.25333649
19R:R:I213 3.2325409
20R:R:V217 3.6575409
21R:R:Q416 3.02409
22R:R:F424 5.2575449
23R:R:W428 7.166509
24R:R:F434 9.328557
25R:R:I438 7.6975456
26R:R:H450 7.79457
27R:R:M451 5.944516
28R:R:I454 6.385418
29R:R:W455 5.81419
30R:R:Y458 4.72833619
31R:R:N460 7.6154119
32R:R:Y468 8.368579
33R:R:F475 4.96286779
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:M451 R:R:N84 22.6668.41YesYes168
2R:R:M81 R:R:N84 17.0624.21YesYes198
3R:R:L34 R:R:M81 14.1964.24NoYes089
4R:R:G77 R:R:M81 52.63921.75NoYes099
5R:R:G77 R:R:V76 51.17433.68NoYes099
6R:R:D73 R:R:V76 38.90252.92YesYes399
7R:R:D73 R:R:N45 20.433713.46YesYes399
8R:R:L44 R:R:V40 13.92281.49NoNo094
9R:R:D73 R:R:P465 10.23724.83YesNo399
10R:R:L74 R:R:N45 10.59764.12NoYes089
11R:R:F475 R:R:Y468 20.34654.13YesYes799
12R:R:Q416 R:R:Y468 87.24572.25YesYes099
13R:R:I420 R:R:Q416 99.41874.12NoYes099
14R:R:I420 R:R:N464 1002.83NoNo099
15R:R:N460 R:R:N464 99.91285.45YesNo1199
16R:R:C427 R:R:N460 11.225411.02NoYes099
17R:R:C427 R:R:L456 10.20816.35NoNo099
18R:R:I66 R:R:Y468 65.579621.76NoYes099
19R:R:I66 R:R:L121 64.69022.85NoNo099
20R:R:L121 R:R:Y65 63.73685.86NoYes098
21R:R:L64 R:R:Y65 38.29219.38NoYes088
22R:R:L64 R:R:T140 36.93761.47NoYes089
23R:R:I120 R:R:Y65 15.03317.25YesYes688
24R:R:L417 R:R:Q416 15.57382.66NoYes099
25R:R:L417 R:R:M421 14.06811.41NoNo099
26R:R:M206 R:R:M421 11.0225.78NoNo099
27R:R:A110 R:R:V76 10.7721.7NoYes089
28R:R:N84 R:R:Y458 10.16744.65YesYes189
29R:R:V80 R:R:Y458 44.45996.31NoYes199
30R:R:I454 R:R:M451 14.94014.37YesYes186
31R:R:I454 R:R:Y458 16.0336.04YesYes189
32R:R:M451 R:R:Y87 35.08312.39YesNo067
33R:R:C180 R:R:Y87 18.10842.69NoNo097
34R:R:C180 R:R:W103 38.36762.61NoNo099
35R:R:K92 R:R:Y87 19.10824.78YesNo027
36R:R:C100 R:R:C180 53.8317.28NoNo099
37R:R:C100 R:R:T182 52.34861.69NoNo099
38R:R:L101 R:R:T182 47.49457.37NoNo989
39R:R:I162 R:R:L104 18.88155.71YesNo099
40R:R:I162 R:R:L101 46.26791.43YesNo098
41R:R:I162 R:R:W158 11.76613.52YesYes098
42R:R:D183 R:R:L104 13.88216.79YesNo279
43R:R:I162 R:R:S105 16.00984.64YesNo099
44R:R:S105 R:R:V159 14.30074.85NoNo095
45R:R:W428 R:R:Y458 93.10551.93YesYes099
46R:R:F424 R:R:W428 33.6249.02YesYes099
47R:R:F424 R:R:I115 14.92273.77YesYes499
48R:R:R127 R:R:T140 31.886.47NoYes089
49R:R:Q131 R:R:R127 29.21755.84YesNo1078
50R:R:Q131 R:R:R134 26.51445.84YesNo075
51R:R:Q130 R:R:R134 25.10175.84NoNo085
52R:R:Q130 R:R:Y126 23.677511.27NoNo089
53R:R:I213 R:R:Y126 19.50354.84YesNo099
54R:R:L163 R:R:V159 12.52184.47NoNo075
55R:R:M436 R:R:V192 11.5516.09NoNo078
56R:R:M436 R:R:Y200 14.20772.39NoNo078
57R:R:F199 R:R:Y200 22.71839.28YesNo098
58R:R:F199 R:R:F424 18.50373.22YesYes499
59R:R:F199 R:R:F432 18.265318.22YesNo099
60R:R:F432 R:R:W428 21.51494.01NoYes099
61R:R:I454 R:R:Y431 14.835510.88YesNo089
62R:R:T453 R:R:Y431 11.75449.99NoNo099
63R:R:C471 R:R:Q416 13.92863.05NoYes099
64R:R:N460 R:R:W428 93.471712.43YesYes099
65R:R:M81 R:R:Y458 52.04055.99YesYes199
66R:R:V80 R:R:W103 43.82059.81NoNo099
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8X5X
Class A
SubFamily Amine
Type Histamine
SubType H1
Species Homo sapiens
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.5
Date 2024-01-17 
D.O.I. 10.1038/s41467-023-44477-4
Net Summary
Imin 1.75
Number of Linked Nodes 240
Number of Links 273
Number of Hubs 33
Number of Links mediated by Hubs 123
Number of Communities 11
Number of Nodes involved in Communities 58
Number of Links involved in Communities 74
Path Summary
Number Of Nodes in MetaPath 67
Number Of Links MetaPath 66
Number of Shortest Paths 37704
Length Of Smallest Path 3
Average Path Length 14.0752
Length of Longest Path 35
Minimum Path Strength 1.3
Average Path Strength 5.60397
Maximum Path Strength 18.225
Minimum Path Correlation 0.7
Average Path Correlation 0.919257
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.22581
Average % Of Corr. Nodes 40.8847
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.1954
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtP35367
Sequence
>8X5X_Chain_R
PLVVVLSTI CLVTVGLNL LVLYAVRSE LHTVGNLYI VSLSVADLI 
VGAVVMPMN ILYLLMSKW SLGRPLCLF WLSMDYVAS TASIFSVFI 
LCIDRYRSV QQPLRRTKT RASATILGA WFLSFLWVI PILGWNHFM 
QREDKCETD FYDVTWFKV MTAIINFYL PTLLMLWFY AKIYKAVKR 
QLNRERKAA KQLGFIMAA FILCWIPYF IFFMVIAFC KNCCNEHLH 
MFTIWLGYI NSTLNPLIY PLCNENFKK TFKR


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
2RH1AAmineAdrenergicβ2Homo sapiens(S)-Carazolol--2.42007-10-3010.1126/science.1150577
8GH1AAmineAdrenergicβ2Homo sapiensEpinephrine--4.12024-03-0610.1038/s41586-024-07153-1
3RZEAAmineHistamineH1Homo sapiensCidoxepin--3.12011-06-1510.1038/nature10236
7DFLAAmineHistamineH1Homo sapiensHistamine-chim(NtGi1L-Gq)/&β;1/&γ;23.32021-03-3110.1038/s41467-021-22427-2
8X5YAAmineHistamineH1Homo sapiensAstemizole--32024-01-1710.1038/s41467-023-44477-4
8X63AAmineHistamineH1Homo sapiensMepyramine--3.22024-01-1710.1038/s41467-023-44477-4
8X64AAmineHistamineH1Homo sapiensDesloratadine--3.42024-01-1710.1038/s41467-023-44477-4
6FJ3B1PeptideParathyroid hormonePTH1Homo sapiensPTH--2.52018-11-2110.1038/s41594-018-0151-4
6NBFB1PeptideParathyroid hormonePTH1Homo sapiensLong-acting PTH analog-Gs/&β;1/&γ;232019-04-1710.1126/science.aav7942
6NBHB1PeptideParathyroid hormonePTH1Homo sapiensLong-acting PTH analog-Gs/&β;1/&γ;23.52019-04-1710.1126/science.aav7942
6NBIB1PeptideParathyroid hormonePTH1Homo sapiensLong-acting PTH analog-Gs/&β;1/&γ;242019-04-1710.1126/science.aav7942
7VVJB1PeptideParathyroid hormonePTH1Homo sapiensPTHrP(1-36)-Gs/&β;1/&γ;23.22022-08-0310.1016/j.molcel.2022.07.003
7VVKB1PeptideParathyroid hormonePTH1Homo sapiensPTH-Gs/&β;1/&γ;23.32022-08-0310.1016/j.molcel.2022.07.003
7VVLB1PeptideParathyroid hormonePTH1Homo sapiensPTH-Gs/&β;1/&γ;22.82022-08-0310.1016/j.molcel.2022.07.003
7VVMB1PeptideParathyroid hormonePTH1Homo sapiensPTH-Gs/&β;1/&γ;23.22022-08-0310.1016/j.molcel.2022.07.003
7VVNB1PeptideParathyroid hormonePTH1Homo sapiensPTH-Gs/&β;1/&γ;23.82022-08-0310.1016/j.molcel.2022.07.003
7VVOB1PeptideParathyroid hormonePTH1Homo sapiensPTH-Gs/&β;1/&γ;24.12022-08-0310.1016/j.molcel.2022.07.003
7Y35B1PeptideParathyroid hormonePTH1Homo sapiensAbaloparatide-Gs/&β;1/&γ;22.92023-07-05To be published
7Y36B1PeptideParathyroid hormonePTH1Homo sapiensTeriparatide-Gs/&β;1/&γ;22.82023-07-05To be published
8FLQB1PeptideParathyroid hormonePTH1Homo sapiensPTH-Gs/&β;1/&γ;22.552023-04-2610.1016/j.str.2023.04.002
8FLRB1PeptideParathyroid hormonePTH1Homo sapiensPTHrP(1-36)-Gs/&β;1/&γ;22.942023-04-2610.1016/j.str.2023.04.002
8FLSB1PeptideParathyroid hormonePTH1Homo sapiensAbaloparatide-Gs/&β;1/&γ;23.092023-04-2610.1016/j.str.2023.04.002
8FLTB1PeptideParathyroid hormonePTH1Homo sapiensM-PTH(1-14)-Gs/&β;1/&γ;23.032023-04-2610.1016/j.str.2023.04.002
8FLUB1PeptideParathyroid hormonePTH1Homo sapiensLong-acting PTH-Gs/&β;1/&γ;22.762023-04-2610.1016/j.str.2023.04.002
8GW8B1PeptideParathyroid hormonePTH1Homo sapiens-KHFGs/&β;1/&γ;22.92023-06-1410.1038/s41586-023-06169-3
8HA0B1PeptideParathyroid hormonePTH1Homo sapiensPTH-chim(NtGi1-Gs)/&β;1/&γ;22.622022-12-2110.1038/s41401-022-01032-z
8HAFB1PeptideParathyroid hormonePTH1Homo sapiensPTHrP(1-36)-chim(NtGi1-Gs)/&β;1/&γ;23.252022-12-2110.1038/s41401-022-01032-z
8HAOB1PeptideParathyroid hormonePTH1Homo sapiensPTH-chim(NtGi1-Gs)/&β;1/&γ;23.762022-12-2110.1038/s41401-022-01032-z
8JR9B1PeptideParathyroid hormonePTH1Homo sapiens-PCO371chim(NtGi1-Gs)/&β;1/&γ;22.572023-08-0210.1038/s41586-023-06467-w




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Download 8X5X.zip



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