Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:S13 3.955415
2R:R:D16 7.7725415
3R:R:L19 3.705405
4R:R:L32 4.67445
5R:R:E51 7.4475436
6R:R:L52 4.17407
7R:R:Y55 4.78833637
8R:R:N58 6.9725459
9R:R:D63 8.4225409
10R:R:L64 4.222547
11R:R:L66 8.6975417
12R:R:I67 4.565445
13R:R:L70 5.5625418
14R:R:W73 4.71416
15R:R:Y76 8.6175416
16R:R:Y77 11.105415
17R:R:D81 6.074514
18R:R:W83 9.028518
19R:R:F97 6.86167617
20R:R:L108 6.2425428
21R:R:D114 6.935438
22R:R:F125 8.39405
23R:R:P126 6.9175435
24R:R:P130 3.91435
25R:R:I158 4.4175404
26R:R:H165 7.874513
27R:R:F167 7.215413
28R:R:Y172 5.77615
29R:R:R186 8.124506
30R:R:F191 6.65409
31R:R:P194 3.605409
32R:R:W195 6.445406
33R:R:M198 5.636527
34R:R:Y202 8.19167629
35R:R:Y241 7.774507
36R:R:H242 7.4125408
37R:R:R248 5.4675415
38R:R:L267 2.6625401
39R:R:F272 6.568514
40R:R:Y275 8.9275416
41R:R:H276 11.45615
42R:R:T283 5.1675417
43R:R:D289 9.012529
44R:R:V304 5.06406
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:D16 R:R:P20 15.05046.44YesNo055
2R:R:D16 R:R:Y77 19.32428.05YesYes155
3R:R:W73 R:R:Y77 31.71713.86YesYes165
4R:R:F97 R:R:W73 92.24434.01YesYes176
5R:R:F167 R:R:Y76 29.26025.16YesYes136
6R:R:W73 R:R:Y76 53.69356.75YesYes166
7R:R:F97 R:R:L66 92.93859.74YesYes177
8R:R:L66 R:R:N100 10016.48YesNo079
9R:R:D63 R:R:N100 75.39326.73YesNo099
10R:R:D63 R:R:N35 31.03929.42YesNo099
11R:R:N35 R:R:P290 14.22616.52NoNo099
12R:R:L64 R:R:N35 15.95624.12YesNo079
13R:R:N100 R:R:S62 32.194410.43NoNo098
14R:R:S62 R:R:V103 29.82976.46NoNo087
15R:R:V103 R:R:W142 28.647414.71NoNo079
16R:R:N58 R:R:W142 24.84544.52YesNo599
17R:R:L57 R:R:N58 23.75534.12NoYes059
18R:R:A42 R:R:L57 22.26921.58NoNo065
19R:R:A42 R:R:L56 21.68351.58NoNo068
20R:R:L52 R:R:L56 21.96554.15YesNo078
21R:R:D114 R:R:L52 92.10334.07YesYes087
22R:R:D114 R:R:Y55 57.3114.6YesYes387
23R:R:V54 R:R:Y55 42.29853.79NoYes067
24R:R:V46 R:R:V54 39.55423.21NoNo056
25R:R:V46 R:R:W43 36.7994.9NoNo053
26R:R:W40 R:R:W43 34.0335.62NoNo033
27R:R:L44 R:R:W40 31.256115.94NoNo043
28R:R:E303 R:R:L44 28.468414.58NoNo064
29R:R:E303 R:R:V304 25.66984.28NoYes066
30R:R:D289 R:R:D63 79.51516.65YesYes099
31R:R:D289 R:R:L108 79.10298.14YesYes298
32R:R:L108 R:R:M198 79.12465.65YesYes287
33R:R:M198 R:R:Y202 47.23944.79YesYes279
34R:R:R115 R:R:Y202 93.81178.23NoYes099
35R:R:R115 R:R:V111 92.01116.54NoNo098
36R:R:L52 R:R:V111 90.15624.47YesNo078
37R:R:D289 R:R:Y293 52.01764.6YesNo299
38R:R:L230 R:R:Y293 51.442710.55NoNo079
39R:R:L230 R:R:Y202 48.53565.86NoYes079
40R:R:L52 R:R:Q45 14.42133.99YesNo075
41R:R:D114 R:R:E51 19.12914.29YesYes386
42R:R:D114 R:R:F125 13.78674.78YesYes085
43R:R:E51 R:R:P130 11.40584.72YesYes365
44R:R:W83 R:R:Y76 46.05719.65YesYes186
45R:R:G94 R:R:W73 13.34744.22NoYes066
46R:R:W83 R:R:Y85 10.060713.5YesNo086
47R:R:C168 R:R:W83 22.30723.92NoYes198
48R:R:C168 R:R:I158 19.913.27NoYes094
49R:R:H276 R:R:Y275 17.97377.62YesYes156
50R:R:Y241 R:R:Y275 56.275113.9YesYes076
51R:R:H242 R:R:Y241 68.09856.53YesYes087
52R:R:H242 R:R:Y102 36.34346.53YesNo087
53R:R:R186 R:R:Y102 34.390923.66YesNo067
54R:R:N149 R:R:R186 16.47684.82NoYes066
55R:R:N149 R:R:T99 14.61118.77NoNo064
56R:R:F95 R:R:T99 12.55567.78NoNo054
57R:R:F272 R:R:H276 15.782613.58YesYes145
58R:R:F167 R:R:Y172 10.0775.16YesYes135
59R:R:Y172 R:R:Y275 15.31085.96YesYes156
60R:R:G94 R:R:Y169 11.25395.79NoNo063
61R:R:F97 R:R:Y98 15.939911.35YesNo075
62R:R:Y241 R:R:Y98 15.00163.97YesNo075
63R:R:F97 R:R:L279 15.88577.31YesNo076
64R:R:L279 R:R:Y241 15.03429.38NoYes067
65R:R:F191 R:R:H242 64.437612.44YesYes098
66R:R:F191 R:R:Y238 63.4834.13YesNo098
67R:R:M198 R:R:S112 26.28816.13YesNo279
68R:R:C201 R:R:S112 33.76725.16NoNo079
69R:R:A120 R:R:Y116 27.20475.34NoNo078
70R:R:C201 R:R:Y116 31.17475.38NoNo078
71R:R:A120 R:R:A208 21.7541.79NoNo075
72R:R:A208 R:R:V119 20.45781.7NoNo058
73R:R:L205 R:R:V119 19.05857.45NoNo088
74R:R:L174 R:R:R248 13.24983.64NoYes035
75R:R:F252 R:R:L174 11.51434.87NoNo043
76R:R:H242 R:R:V187 16.65584.15YesNo086
77R:R:L245 R:R:V187 10.48924.47NoNo066
78R:R:G190 R:R:R186 12.55564.5NoYes066
79R:R:G190 R:R:P194 10.48924.06NoYes069
80R:R:L205 R:R:V223 17.64831.49NoNo087
81R:R:L209 R:R:V223 14.89861.49NoNo087
82R:R:L209 R:R:R220 13.45054.86NoNo086
83R:R:R220 R:R:S212 10.5383.95NoNo065
84R:R:N285 R:R:Y238 63.09259.3NoNo098
85R:R:L271 R:R:R248 17.60494.86NoYes045
86R:R:L247 R:R:L271 15.25651.38NoNo054
87R:R:L247 R:R:V251 13.39621.49NoNo054
88R:R:L267 R:R:V251 11.51432.98YesNo014
89R:R:C294 R:R:V304 14.36713.42NoYes066
90R:R:D81 R:R:S13 12.95694.42YesYes145
91R:R:G14 R:R:S13 29.02161.86NoYes025
92R:R:G14 R:R:S17 21.78111.86NoNo024
93R:R:F167 R:R:H165 13.445110.18YesYes133
94R:R:H276 R:R:Y77 17.626619.6YesYes155
95R:R:F272 R:R:S13 16.40093.96YesYes145
96R:R:D289 R:R:N285 64.26413.46YesNo099
97R:R:R248 R:R:Y275 25.61028.23YesYes156
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8ZF4
Class A
SubFamily Orphan
Type Orphan
SubType GPR4
Species Xenopus tropicalis
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.05
Date 2025-02-26
D.O.I. 10.1016/j.cell.2024.12.001
Net Summary
Imin 3.77
Number of Linked Nodes 248
Number of Links 279
Number of Hubs 44
Number of Links mediated by Hubs 144
Number of Communities 5
Number of Nodes involved in Communities 43
Number of Links involved in Communities 65
Path Summary
Number Of Nodes in MetaPath 98
Number Of Links MetaPath 97
Number of Shortest Paths 50676
Length Of Smallest Path 3
Average Path Length 14.9994
Length of Longest Path 33
Minimum Path Strength 1.22
Average Path Strength 6.88009
Maximum Path Strength 16.255
Minimum Path Correlation 0.7
Average Path Correlation 0.933774
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 48.9899
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 49.4729
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtA0A6I8PUB9
Sequence
>8ZF4_Chain_R
SGLDSVLPP SLYALVFTL GLPANLLAL WAAWLQVRK GRELGVYLL 
NLSLSDLLL ICALPPWTD YYLRRDVWG YGPGACRLF GFVFYTNLY 
VGAAFLSCV SADRYLAVA HPLRFPGAR PIRSAAAVS ALIWMLELA 
ANAPPLLGE AIHRDRYNH TFCYESYPL SGRGAALAN VGRVLAGFL 
LPWGVMMLC YAGLLRALR GSASCEQRE RRRVRRLAL GLPCVALLC 
YGPYHALLL LRSLVFLVG GCALEERLF PAYHASLAL ATLNCLADP 
ALYCLACPG ARGEVAKVV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8ZFEAOrphanOrphanGPR4Mus musculus---2.562025-02-2610.1016/j.cell.2024.12.001
8ZFDAOrphanOrphanGPR4Mus musculus---2.562025-02-2610.1016/j.cell.2024.12.001
8ZFBAOrphanOrphanGPR4Xenopus tropicalis---3.782025-02-2610.1016/j.cell.2024.12.001
8ZF7AOrphanOrphanGPR4Xenopus tropicalis---3.152025-02-2610.1016/j.cell.2024.12.001
9JVGAOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.762025-02-2610.1016/j.cell.2024.12.001
9JVG (No Gprot) AOrphanOrphanGPR4Mus musculus--2.762025-02-2610.1016/j.cell.2024.12.001
8ZFCAOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.682025-02-2610.1016/j.cell.2024.12.001
8ZFC (No Gprot) AOrphanOrphanGPR4Mus musculus--2.682025-02-2610.1016/j.cell.2024.12.001
8ZFAAOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.962025-02-2610.1016/j.cell.2024.12.001
8ZFA (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.962025-02-2610.1016/j.cell.2024.12.001
8ZF9AOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.562025-02-2610.1016/j.cell.2024.12.001
8ZF9 (No Gprot) AOrphanOrphanGPR4Mus musculus--2.562025-02-2610.1016/j.cell.2024.12.001
8ZF6AOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.982025-02-2610.1016/j.cell.2024.12.001
8ZF6 (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.982025-02-2610.1016/j.cell.2024.12.001
8ZD1AOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.62025-02-2610.1016/j.cell.2024.12.001
8ZD1 (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.62025-02-2610.1016/j.cell.2024.12.001
8ZF4AOrphanOrphanGPR4Xenopus tropicalis---3.052025-02-2610.1016/j.cell.2024.12.001
9J31AOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.052025-01-22doi.org/10.1038/s41467-025-55901-2
9J31 (No Gprot) AOrphanOrphanGPR4Danio rerio--3.052025-01-22doi.org/10.1038/s41467-025-55901-2
8ZFZAOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.32025-01-22doi.org/10.1038/s41467-025-55901-2
8ZFZ (No Gprot) AOrphanOrphanGPR4Danio rerio--3.32025-01-22doi.org/10.1038/s41467-025-55901-2
9BIPAOrphanOrphanGPR4Homo sapiens--Gs/β1/γ22.82025-01-22doi.org/10.1016/j.cell.2024.11.036
9BIP (No Gprot) AOrphanOrphanGPR4Homo sapiens--2.82025-01-22doi.org/10.1016/j.cell.2024.11.036
8ZFJAOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.12024-08-07To be published
8ZFJ (No Gprot) AOrphanOrphanGPR4Danio rerio--3.12024-08-07To be published
9JVMAOrphanOrphanGPR4Xenopus tropicalis---2.362025-02-2610.1016/j.cell.2024.12.001
9JVHAOrphanOrphanGPR4Mus musculus---2.762025-02-2610.1016/j.cell.2024.12.001




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8ZF4.zip



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