Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:R16 5.9975404
2R:R:P22 9.3475415
3R:R:Y26 5.65408
4R:R:V56 2.946536
5R:R:Y57 5.59407
6R:R:L61 5.1875429
7R:R:D65 7.325429
8R:R:Y68 8.004505
9R:R:W75 12.298516
10R:R:Y78 10.96515
11R:R:F79 9.02414
12R:R:W85 12.82519
13R:R:H87 11.38417
14R:R:F99 13.124516
15R:R:Y100 5.436515
16R:R:Y104 8.315407
17R:R:I105 4.5506
18R:R:F109 9.3125437
19R:R:L110 6.404528
20R:R:D116 7.7975468
21R:R:Y118 5.308578
22R:R:H123 7.1875476
23R:R:W144 8.225439
24R:R:H167 12.3225443
25R:R:E172 7.49415
26R:R:M176 6.8575483
27R:R:W179 10.2975403
28R:R:M183 4.4405
29R:R:F192 7.2075408
30R:R:Y203 7.98408
31R:R:Y242 7.0175407
32R:R:H243 8.17408
33R:R:H271 9.646514
34R:R:D284 8.212529
35R:R:Y288 5.72833629
36R:R:V299 3.7025455
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:E172 R:R:H271 40.29039.85YesYes154
2R:R:E172 R:R:Y100 25.60013.37YesYes155
3R:R:F171 R:R:Y100 23.026.19NoYes045
4R:R:F171 R:R:P154 21.50077.22NoNo046
5R:R:P154 R:R:W179 20.56046.76NoYes063
6R:R:H271 R:R:Y270 31.84013.27YesNo044
7R:R:R249 R:R:Y270 30.316519.55NoNo054
8R:R:M176 R:R:R249 23.44914.89YesNo835
9R:R:M176 R:R:V180 12.29616.09YesNo035
10R:R:V180 R:R:W179 12.862411.03NoYes053
11R:R:F79 R:R:P22 15.1347.22YesYes145
12R:R:F21 R:R:P22 10.46194.33NoYes065
13R:R:E172 R:R:W75 18.01833.27YesYes156
14R:R:F99 R:R:W75 41.42339.09YesYes166
15R:R:F99 R:R:Y100 36.43619.28YesYes165
16R:R:F99 R:R:Y68 74.83738.25YesYes065
17R:R:I30 R:R:L72 11.35157.14NoNo078
18R:R:C281 R:R:Y68 79.54955.38NoYes085
19R:R:C281 R:R:D65 79.70377.78NoYes089
20R:R:D65 R:R:N37 22.736913.46YesNo099
21R:R:N37 R:R:P285 21.910713.03NoNo099
22R:R:A40 R:R:P285 17.7691.87NoNo089
23R:R:A40 R:R:C289 16.91743.61NoNo086
24R:R:A43 R:R:C289 11.71921.81NoNo066
25R:R:A43 R:R:D298 10.83814.63NoNo065
26R:R:D284 R:R:D65 82.43.99YesYes299
27R:R:D284 R:R:Y288 1004.6YesYes299
28R:R:L58 R:R:Y288 85.8933.52NoYes079
29R:R:G55 R:R:L58 85.51695.13NoNo077
30R:R:G55 R:R:Q47 85.13653.29NoNo075
31R:R:N52 R:R:Q47 84.751913.2NoNo075
32R:R:E53 R:R:N52 42.82186.57NoNo067
33R:R:D116 R:R:E53 41.006712.99YesNo686
34R:R:D116 R:R:Y57 81.15129.2YesYes087
35R:R:A136 R:R:Y57 72.79825.34NoYes077
36R:R:A136 R:R:V56 71.5625.09NoYes076
37R:R:S140 R:R:V56 60.24643.23NoYes366
38R:R:N60 R:R:S140 28.797211.92NoNo396
39R:R:N60 R:R:W144 27.46816.78NoYes399
40R:R:I63 R:R:W144 13.9023.52NoYes059
41R:R:I63 R:R:L41 11.12972.85NoNo057
42R:R:L54 R:R:N52 41.54344.12NoNo077
43R:R:D116 R:R:L54 41.01095.43YesNo087
44R:R:F109 R:R:S140 30.16863.96YesNo376
45R:R:F109 R:R:W144 27.510412.03YesYes379
46R:R:I105 R:R:W144 38.663310.57YesYes069
47R:R:F79 R:R:Y78 14.876210.32YesYes145
48R:R:W85 R:R:Y78 17.30215.43YesYes195
49R:R:I105 R:R:S101 16.67023.1YesNo065
50R:R:N151 R:R:S101 13.9028.94NoNo065
51R:R:F97 R:R:N151 11.129710.87NoNo056
52R:R:L274 R:R:Y242 12.207310.55NoYes057
53R:R:R187 R:R:Y104 10.816910.29NoYes057
54R:R:F192 R:R:H243 12.900411.31YesYes088
55R:R:F192 R:R:V235 10.47883.93YesNo089
56R:R:R117 R:R:Y288 25.68046.17NoYes299
57R:R:C202 R:R:S114 30.51095.16NoNo069
58R:R:S114 R:R:Y203 32.074613.99NoYes098
59R:R:R117 R:R:Y203 25.06558.23NoYes098
60R:R:L231 R:R:Y203 25.26417.03NoYes078
61R:R:L231 R:R:Y288 28.79938.21NoYes079
62R:R:C202 R:R:Y118 27.37092.69NoYes068
63R:R:H123 R:R:Y118 11.372711.98YesYes768
64R:R:L254 R:R:Y253 14.87833.52NoNo013
65R:R:M176 R:R:Y253 31.63092.39YesNo033
66R:R:F239 R:R:T277 10.86765.19NoNo098
67R:R:A228 R:R:Y203 17.75422.67NoYes078
68R:R:A228 R:R:L207 16.14834.73NoNo074
69R:R:I224 R:R:L207 11.31561.43NoNo064
70R:R:F239 R:R:N280 23.22089.67NoNo099
71R:R:P257 R:R:Y253 14.87839.74NoNo013
72R:R:P257 R:R:R256 12.76521.44NoNo012
73R:R:R256 R:R:W258 10.64792NoNo021
74R:R:W75 R:R:Y78 25.88758.68YesYes165
75R:R:F192 R:R:F239 12.69767.5YesNo089
76R:R:D284 R:R:N280 23.026412.12YesNo099
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 9JVH
Class A
SubFamily Orphan
Type Orphan
SubType GPR4
Species Mus Musculus
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.76
Date  2025-02-26 
D.O.I. 10.1016/j.cell.2024.12.001
Net Summary
Imin 3.23
Number of Linked Nodes 272
Number of Links 300
Number of Hubs 36
Number of Links mediated by Hubs 129
Number of Communities 8
Number of Nodes involved in Communities 44
Number of Links involved in Communities 58
Path Summary
Number Of Nodes in MetaPath 77
Number Of Links MetaPath 76
Number of Shortest Paths 87323
Length Of Smallest Path 3
Average Path Length 17.8071
Length of Longest Path 38
Minimum Path Strength 1.335
Average Path Strength 7.27958
Maximum Path Strength 23.885
Minimum Path Correlation 0.7
Average Path Correlation 0.931351
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 3.84615
Average % Of Corr. Nodes 43.5447
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 41.9406
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process• cellular response to stimulus   • regulation of biological process   • regulation of cellular process   • response to stimulus   • signaling   • biological regulation   • adenylate cyclase-activating G protein-coupled receptor signaling pathway   • cell communication   • adenylate cyclase-modulating G protein-coupled receptor signaling pathway   • G protein-coupled receptor signaling pathway   • cellular process   • signal transduction   • cell adhesion   • regulation of cell adhesion   • regulation of defense response   • regulation of response to external stimulus   • defense response   • positive regulation of biological process   • response to external stimulus   • regulation of inflammatory response   • positive regulation of response to stimulus   • positive regulation of response to external stimulus   • positive regulation of inflammatory response   • regulation of response to stimulus   • regulation of response to stress   • response to stress   • positive regulation of defense response   • inflammatory response   • phospholipase C-activating G protein-coupled receptor signaling pathway   • positive regulation of cell communication   • small GTPase-mediated signal transduction   • positive regulation of signal transduction   • regulation of small GTPase mediated signal transduction   • regulation of signal transduction   • intracellular signal transduction   • Rho protein signal transduction   • regulation of intracellular signal transduction   • intracellular signaling cassette   • positive regulation of cellular process   • regulation of signaling   • positive regulation of intracellular signal transduction   • regulation of Rho protein signal transduction   • positive regulation of Rho protein signal transduction   • regulation of cell communication   • positive regulation of small GTPase mediated signal transduction   • positive regulation of signaling   • regulation of vascular permeability   • multicellular organismal process   • system process   • circulatory system process   • vascular process in circulatory system   • regulation of biological quality   • blood circulation   • cellular developmental process   • connective tissue development   • mesangial cell development   • cell development   • epithelial cell differentiation   • renal system development   • kidney vasculature development   • multicellular organism development   • pericyte cell differentiation   • renal system vasculature development   • mesangial cell differentiation   • cell differentiation   • anatomical structure development   • nephron development   • system development   • epithelial cell differentiation involved in kidney development   • blood vessel development   • developmental process   • epithelium development   • animal organ development   • tissue development   • glomerular mesangium development   • glomerular mesangial cell development   • vasculature development   • glomerular mesangial cell differentiation   • circulatory system development   • glomerulus development   • epithelial cell development   • cell differentiation involved in kidney development   • glomerulus vasculature development   • kidney development   • regulation of developmental process   • negative regulation of biological process   • angiogenesis   • regulation of vasculature development   • tube morphogenesis   • regulation of multicellular organismal process   • regulation of anatomical structure morphogenesis   • regulation of multicellular organismal development   • blood vessel morphogenesis   • tube development   • negative regulation of blood vessel morphogenesis   • negative regulation of developmental process   • negative regulation of angiogenesis   • negative regulation of vasculature development   • anatomical structure morphogenesis   • regulation of angiogenesis   • anatomical structure formation involved in morphogenesis   • negative regulation of multicellular organismal process   • response to pH   • response to abiotic stimulus   • response to acidic pH   • wound healing   • angiogenesis involved in wound healing   • response to wounding   • cell periphery   • cellular anatomical structure   • plasma membrane   • membrane
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtQ8BUD0
Sequence
>9JVH_Chain_R
VDSRVDHLF PPSLYIFVI GVGLPTNCL ALWAAYRQV RQHNELGVY 
LMNLSIADL LYICTLPLW VDYFLHHDN WIHGPGSCK LFGFIFYSN 
IYISIAFLC CISVDRYLA VAHPLRFAR LRRVKTAVA VSSVVWATE 
LGANSAPLF HDELFRDRY NHTFCFEKF PMERWVAWM NLYRVFVGF 
LFPWALMLL CYRGILRAV QSSVSTERQ EKVKIKRLA LSLIAIVLV 
CFAPYHALL LSRSAVYLG RPWDCGFEE RVFSAYHSS LAFTSLNCV 
ADPILYCLV NEGARSDVA KALHNL


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8ZFEAOrphanOrphanGPR4Mus musculus---2.562025-02-2610.1016/j.cell.2024.12.001
8ZFDAOrphanOrphanGPR4Mus musculus---2.562025-02-2610.1016/j.cell.2024.12.001
8ZFBAOrphanOrphanGPR4Xenopus tropicalis---3.782025-02-2610.1016/j.cell.2024.12.001
8ZF7AOrphanOrphanGPR4Xenopus tropicalis---3.152025-02-2610.1016/j.cell.2024.12.001
9JVGAOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.762025-02-2610.1016/j.cell.2024.12.001
9JVG (No Gprot) AOrphanOrphanGPR4Mus musculus--2.762025-02-2610.1016/j.cell.2024.12.001
8ZFCAOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.682025-02-2610.1016/j.cell.2024.12.001
8ZFC (No Gprot) AOrphanOrphanGPR4Mus musculus--2.682025-02-2610.1016/j.cell.2024.12.001
8ZFAAOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.962025-02-2610.1016/j.cell.2024.12.001
8ZFA (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.962025-02-2610.1016/j.cell.2024.12.001
8ZF9AOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.562025-02-2610.1016/j.cell.2024.12.001
8ZF9 (No Gprot) AOrphanOrphanGPR4Mus musculus--2.562025-02-2610.1016/j.cell.2024.12.001
8ZF6AOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.982025-02-2610.1016/j.cell.2024.12.001
8ZF6 (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.982025-02-2610.1016/j.cell.2024.12.001
8ZD1AOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.62025-02-2610.1016/j.cell.2024.12.001
8ZD1 (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.62025-02-2610.1016/j.cell.2024.12.001
8ZF4AOrphanOrphanGPR4Xenopus tropicalis---3.052025-02-2610.1016/j.cell.2024.12.001
9J31AOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.052025-01-22doi.org/10.1038/s41467-025-55901-2
9J31 (No Gprot) AOrphanOrphanGPR4Danio rerio--3.052025-01-22doi.org/10.1038/s41467-025-55901-2
8ZFZAOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.32025-01-22doi.org/10.1038/s41467-025-55901-2
8ZFZ (No Gprot) AOrphanOrphanGPR4Danio rerio--3.32025-01-22doi.org/10.1038/s41467-025-55901-2
9BIPAOrphanOrphanGPR4Homo sapiens--Gs/β1/γ22.82025-01-22doi.org/10.1016/j.cell.2024.11.036
9BIP (No Gprot) AOrphanOrphanGPR4Homo sapiens--2.82025-01-22doi.org/10.1016/j.cell.2024.11.036
8ZFJAOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.12024-08-07To be published
8ZFJ (No Gprot) AOrphanOrphanGPR4Danio rerio--3.12024-08-07To be published
9JVMAOrphanOrphanGPR4Xenopus tropicalis---2.362025-02-2610.1016/j.cell.2024.12.001
9JVHAOrphanOrphanGPR4Mus musculus---2.762025-02-2610.1016/j.cell.2024.12.001




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Download 9JVH.zip



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