Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:Y24 6.8525408
2R:R:G31 2.6375408
3R:R:N35 9.3025409
4R:R:V46 2.93415
5R:R:E51 10.416516
6R:R:Y55 6.16517
7R:R:I67 7.33455
8R:R:W73 6.3426
9R:R:Y76 7.29626
10R:R:Y77 10.87525
11R:R:D81 7.8325424
12R:R:W83 5.93714728
13R:R:F95 5.59445
14R:R:Y102 8.3875447
15R:R:F107 8.9175437
16R:R:D114 8.6125418
17R:R:R115 5.865419
18R:R:Y116 4.568578
19R:R:F125 10.1825415
20R:R:P126 5.9275415
21R:R:W142 6.846539
22R:R:E145 5.495407
23R:R:N149 7.168546
24R:R:F167 12.2925423
25R:R:C168 3.87429
26R:R:Y172 10.8175425
27R:R:L174 6.9425403
28R:R:V184 2.4175404
29R:R:V187 4.7625486
30R:R:P194 2.685409
31R:R:Y202 8.1725409
32R:R:Y238 6.87408
33R:R:Y241 6.39286767
34R:R:R248 10.5975405
35R:R:Y275 9.765466
36R:R:H276 9.0125425
37R:R:N285 9.645419
38R:R:D289 10.57419
39R:R:Y293 6.314519
40R:R:C294 2.235406
41R:R:E303 6406
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:Y76 R:R:Y77 17.46966.95YesYes265
2R:R:C90 R:R:W83 12.45069.14NoYes298
3R:R:C90 R:R:I158 11.33771.64NoNo294
4R:R:I158 R:R:T166 20.49353.04NoNo045
5R:R:T166 R:R:V82 15.93213.17NoNo054
6R:R:N164 R:R:V82 11.341314.78NoNo064
7R:R:C168 R:R:W83 13.61475.22YesYes298
8R:R:C168 R:R:I158 11.39631.64YesNo294
9R:R:F28 R:R:P71 14.22987.22NoNo079
10R:R:P71 R:R:P72 15.36835.84NoNo096
11R:R:F93 R:R:P72 16.499517.34NoNo056
12R:R:F93 R:R:Y85 20.95114.13NoNo056
13R:R:W83 R:R:Y85 22.04573.86YesNo086
14R:R:F28 R:R:I67 10.70438.79NoYes575
15R:R:W73 R:R:W83 42.64175.62YesYes268
16R:R:F97 R:R:W73 61.974710.02NoYes076
17R:R:F97 R:R:L66 22.43743.65NoNo077
18R:R:C286 R:R:L66 19.24154.76NoNo077
19R:R:C286 R:R:D63 18.161510.89NoNo079
20R:R:D63 R:R:N35 17.074218.85NoYes099
21R:R:N35 R:R:P290 11.5289.77YesNo099
22R:R:A38 R:R:P290 10.39681.87NoNo099
23R:R:F97 R:R:Y98 73.84686.19NoNo075
24R:R:Y241 R:R:Y98 74.33743.97YesNo075
25R:R:L101 R:R:Y241 1003.52NoYes077
26R:R:L101 R:R:Y238 99.73285.86NoYes078
27R:R:N285 R:R:Y238 98.590616.28YesYes098
28R:R:L108 R:R:N285 48.3164.12NoYes189
29R:R:L108 R:R:Y293 47.82184.69NoYes189
30R:R:R115 R:R:Y293 84.07538.23YesYes199
31R:R:L52 R:R:R115 43.24944.86NoYes179
32R:R:D114 R:R:L52 42.10728.14YesNo187
33R:R:D114 R:R:Y55 26.81943.45YesYes187
34R:R:V54 R:R:Y55 23.44786.31NoYes167
35R:R:V46 R:R:V54 20.12371.6YesNo156
36R:R:V46 R:R:W43 16.85464.9YesNo053
37R:R:W40 R:R:W43 13.51591.87NoNo033
38R:R:D289 R:R:N285 49.721813.46YesYes199
39R:R:D289 R:R:Y293 48.3495.75YesYes199
40R:R:E303 R:R:W40 11.83196.54YesNo063
41R:R:E145 R:R:Y102 15.22553.37YesYes077
42R:R:L101 R:R:Y102 31.13933.52NoYes077
43R:R:N149 R:R:Y102 11.67458.14YesYes467
44R:R:R115 R:R:Y202 40.39025.14YesYes099
45R:R:S112 R:R:Y202 28.631615.26NoYes099
46R:R:C201 R:R:S112 24.17265.16NoNo079
47R:R:C201 R:R:Y116 21.58086.72NoYes078
48R:R:A120 R:R:Y116 10.07475.34NoYes778
49R:R:R248 R:R:Y172 14.34699.26YesYes055
50R:R:H242 R:R:Y241 18.47649.8NoYes087
51R:R:H242 R:R:V187 10.81424.15NoYes086
52R:R:Y241 R:R:Y275 22.708311.91YesYes676
53R:R:R248 R:R:Y275 19.486715.43YesYes056
54R:R:W73 R:R:Y76 18.24576.75YesYes266
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8ZFB
Class A
SubFamily Orphan
Type Orphan
SubType GPR4
Species Xenopus tropicalis
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.78
Date 2025-02-26 
D.O.I. 10.1016/j.cell.2024.12.001
Net Summary
Imin 3.37
Number of Linked Nodes 256
Number of Links 284
Number of Hubs 41
Number of Links mediated by Hubs 145
Number of Communities 10
Number of Nodes involved in Communities 60
Number of Links involved in Communities 78
Path Summary
Number Of Nodes in MetaPath 55
Number Of Links MetaPath 54
Number of Shortest Paths 47571
Length Of Smallest Path 3
Average Path Length 14.0571
Length of Longest Path 32
Minimum Path Strength 1.12
Average Path Strength 6.86111
Maximum Path Strength 17.305
Minimum Path Correlation 0.7
Average Path Correlation 0.926949
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4
Average % Of Corr. Nodes 48.3922
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 48.1092
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtA0A6I8PUB9
Sequence
>8ZFB_Chain_R
LDSVLPPSL YALVFTLGL PANLLALWA AWLQVRKGR ELGVYLLNL 
SLSDLLLIC ALPPWTDYY LRRDVWGYG PGACRLFGF VFYTNLYVG 
AAFLSCVSA DRYLAVAHP LRFPGARPI RSAAAVSAL IWMLELAAN 
APPLLGEAI HRDRYNHTF CYESYPLSG RGAALANVG RVLAGFLLP 
WGVMMLCYA GLLRALRGS ASCEQRERR RVRRLALGL PCVALLCYG 
PYHALLLLR SLVFLVGGC ALEERLFPA YHASLALAT LNCLADPAL 
YCLACPGAR GEVAKVV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8ZFEAOrphanOrphanGPR4Mus musculus---2.562025-02-2610.1016/j.cell.2024.12.001
8ZFDAOrphanOrphanGPR4Mus musculus---2.562025-02-2610.1016/j.cell.2024.12.001
8ZFBAOrphanOrphanGPR4Xenopus tropicalis---3.782025-02-2610.1016/j.cell.2024.12.001
8ZF7AOrphanOrphanGPR4Xenopus tropicalis---3.152025-02-2610.1016/j.cell.2024.12.001
9JVGAOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.762025-02-2610.1016/j.cell.2024.12.001
9JVG (No Gprot) AOrphanOrphanGPR4Mus musculus--2.762025-02-2610.1016/j.cell.2024.12.001
8ZFCAOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.682025-02-2610.1016/j.cell.2024.12.001
8ZFC (No Gprot) AOrphanOrphanGPR4Mus musculus--2.682025-02-2610.1016/j.cell.2024.12.001
8ZFAAOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.962025-02-2610.1016/j.cell.2024.12.001
8ZFA (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.962025-02-2610.1016/j.cell.2024.12.001
8ZF9AOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.562025-02-2610.1016/j.cell.2024.12.001
8ZF9 (No Gprot) AOrphanOrphanGPR4Mus musculus--2.562025-02-2610.1016/j.cell.2024.12.001
8ZF6AOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.982025-02-2610.1016/j.cell.2024.12.001
8ZF6 (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.982025-02-2610.1016/j.cell.2024.12.001
8ZD1AOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.62025-02-2610.1016/j.cell.2024.12.001
8ZD1 (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.62025-02-2610.1016/j.cell.2024.12.001
8ZF4AOrphanOrphanGPR4Xenopus tropicalis---3.052025-02-2610.1016/j.cell.2024.12.001
9J31AOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.052025-01-22doi.org/10.1038/s41467-025-55901-2
9J31 (No Gprot) AOrphanOrphanGPR4Danio rerio--3.052025-01-22doi.org/10.1038/s41467-025-55901-2
8ZFZAOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.32025-01-22doi.org/10.1038/s41467-025-55901-2
8ZFZ (No Gprot) AOrphanOrphanGPR4Danio rerio--3.32025-01-22doi.org/10.1038/s41467-025-55901-2
9BIPAOrphanOrphanGPR4Homo sapiens--Gs/β1/γ22.82025-01-22doi.org/10.1016/j.cell.2024.11.036
9BIP (No Gprot) AOrphanOrphanGPR4Homo sapiens--2.82025-01-22doi.org/10.1016/j.cell.2024.11.036
8ZFJAOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.12024-08-07To be published
8ZFJ (No Gprot) AOrphanOrphanGPR4Danio rerio--3.12024-08-07To be published
9JVMAOrphanOrphanGPR4Xenopus tropicalis---2.362025-02-2610.1016/j.cell.2024.12.001
9JVHAOrphanOrphanGPR4Mus musculus---2.762025-02-2610.1016/j.cell.2024.12.001




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