Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:P20 4.7125415
2R:R:Y24 6.3975418
3R:R:W40 9.985433
4R:R:Y55 4.734567
5R:R:N58 7.275459
6R:R:Y76 7.5225406
7R:R:Y77 12.025415
8R:R:W83 5.44667628
9R:R:C90 5.5429
10R:R:R91 4.61427
11R:R:F93 6.1825425
12R:R:F97 6.69407
13R:R:Y102 5.4825407
14R:R:F107 8.5375457
15R:R:L108 6.615448
16R:R:D114 7.615468
17R:R:F125 7.7825405
18R:R:W142 6.77459
19R:R:H165 8.308513
20R:R:Y172 8.78167615
21R:R:R186 4.205406
22R:R:W195 5.802506
23R:R:M198 5.9125407
24R:R:C201 3.85407
25R:R:Y202 7.896509
26R:R:Y238 5.9325418
27R:R:Y241 6.32667617
28R:R:H242 7.2075418
29R:R:L245 7.1875416
30R:R:R248 9.078515
31R:R:F252 2.602504
32R:R:L271 3.12404
33R:R:F272 7.2025414
34R:R:Y275 8.89416
35R:R:H276 10.3183615
36R:R:N285 8.835409
37R:R:D289 9.84449
38R:R:Y293 5.6549
39R:R:E303 7.02436
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:H276 R:R:Y77 26.281120.69YesYes155
2R:R:Y24 R:R:Y77 11.91648.94YesYes185
3R:R:T283 R:R:Y24 14.42044.99NoYes078
4R:R:F97 R:R:T283 15.73983.89YesNo077
5R:R:F97 R:R:L66 71.01057.31YesNo077
6R:R:C286 R:R:L66 54.71314.76NoNo077
7R:R:H276 R:R:Y275 49.4823.27YesYes156
8R:R:Y241 R:R:Y275 74.127812.91YesYes176
9R:R:Y241 R:R:Y98 33.39844.96YesNo075
10R:R:F97 R:R:Y98 32.7348.25YesNo075
11R:R:L279 R:R:Y241 33.38448.21NoYes067
12R:R:F97 R:R:L279 32.64587.31YesNo076
13R:R:C286 R:R:D63 44.678310.89NoNo079
14R:R:D63 R:R:N35 42.643412.12NoNo099
15R:R:N35 R:R:P290 32.32986.52NoNo099
16R:R:A38 R:R:P290 21.7841.87NoNo099
17R:R:A38 R:R:C294 19.64693.61NoNo096
18R:R:H242 R:R:Y241 1003.27YesYes187
19R:R:H242 R:R:Y238 32.14873.27YesYes188
20R:R:N285 R:R:Y238 31.13599.3YesYes098
21R:R:D289 R:R:N285 29.379813.46YesYes099
22R:R:D289 R:R:Y293 11.14526.9YesYes499
23R:R:L56 R:R:Y293 14.02563.52NoYes089
24R:R:A42 R:R:L56 11.41461.58NoNo068
25R:R:A42 R:R:L57 10.57381.58NoNo065
26R:R:F191 R:R:H242 70.96413.58NoYes198
27R:R:F191 R:R:W195 71.46577.02NoYes096
28R:R:M199 R:R:W195 69.16143.49NoYes046
29R:R:M199 R:R:P231 68.72945.03NoNo047
30R:R:P231 R:R:Y202 52.35779.74NoYes079
31R:R:R115 R:R:Y202 34.44838.23NoYes099
32R:R:R115 R:R:V111 33.39376.54NoNo098
33R:R:L52 R:R:V111 32.23694.47NoNo078
34R:R:D114 R:R:L52 31.16386.79YesNo087
35R:R:D114 R:R:Y55 18.5834.6YesYes687
36R:R:V54 R:R:Y55 15.03372.52NoYes067
37R:R:V46 R:R:V54 12.35773.21NoNo056
38R:R:V46 R:R:W43 11.00583.68NoNo053
39R:R:L66 R:R:N100 20.083613.73NoNo079
40R:R:N100 R:R:S62 18.471510.43NoNo098
41R:R:S62 R:R:V103 16.9576.46NoNo087
42R:R:V103 R:R:W142 16.246212.26NoYes079
43R:R:D289 R:R:L108 16.994212.21YesYes498
44R:R:Y76 R:R:Y77 23.135912.91YesYes065
45R:R:W83 R:R:Y76 36.2884.82YesYes086
46R:R:E170 R:R:H276 15.86068.62NoYes165
47R:R:E170 R:R:Y76 18.19745.61NoYes066
48R:R:W83 R:R:Y85 13.23112.89YesNo086
49R:R:F167 R:R:Y172 18.48559.28NoYes135
50R:R:F167 R:R:H165 13.21257.92NoYes133
51R:R:H276 R:R:Y172 11.72133.27YesYes155
52R:R:C90 R:R:W83 10.60167.84YesYes298
53R:R:H242 R:R:Y102 18.53668.71YesYes087
54R:R:M198 R:R:P231 17.440210.06YesNo077
55R:R:L108 R:R:M198 19.56794.24YesYes087
56R:R:M198 R:R:S112 31.00126.13YesNo079
57R:R:C201 R:R:S112 45.73295.16YesNo079
58R:R:C201 R:R:V197 16.65041.71YesNo076
59R:R:S109 R:R:V197 13.3384.85NoNo076
60R:R:P194 R:R:S109 10.01633.56NoNo097
61R:R:S112 R:R:Y202 19.433213.99NoYes099
62R:R:A120 R:R:Y116 13.02675.34NoNo078
63R:R:C201 R:R:Y116 22.93616.72YesNo078
64R:R:A227 R:R:Y202 14.69924NoYes079
65R:R:A227 R:R:L206 13.35664.73NoNo075
66R:R:R248 R:R:Y172 12.45999.26YesYes155
67R:R:L174 R:R:R248 18.46234.86NoYes035
68R:R:R248 R:R:Y275 31.716612.35YesYes156
69R:R:F252 R:R:L174 13.04063.65YesNo043
70R:R:S278 R:R:Y241 11.11735.09NoYes077
71R:R:A300 R:R:C297 13.181.81NoNo087
72R:R:A300 R:R:C294 15.34491.81NoNo086
73R:R:C297 R:R:P298 11.00583.77NoNo076
74R:R:L230 R:R:Y293 10.56459.38NoYes079
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 8ZF7
Class A
SubFamily Orphan
Type Orphan
SubType GPR4
Species Xenopus tropicalis
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 3.15
Date 2025-02-26 
D.O.I. 10.1016/j.cell.2024.12.001
Net Summary
Imin 3.27
Number of Linked Nodes 248
Number of Links 269
Number of Hubs 39
Number of Links mediated by Hubs 137
Number of Communities 6
Number of Nodes involved in Communities 42
Number of Links involved in Communities 55
Path Summary
Number Of Nodes in MetaPath 75
Number Of Links MetaPath 74
Number of Shortest Paths 44853
Length Of Smallest Path 3
Average Path Length 13.6066
Length of Longest Path 33
Minimum Path Strength 1.355
Average Path Strength 6.70324
Maximum Path Strength 17.7
Minimum Path Correlation 0.7
Average Path Correlation 0.929716
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 4.34783
Average % Of Corr. Nodes 52.103
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 44.8789
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtA0A6I8PUB9
Sequence
>8ZF7_Chain_R
SGLDSVLPP SLYALVFTL GLPANLLAL WAAWLQVRK GRELGVYLL 
NLSLSDLLL ICALPPWTD YYLRRDVWG YGPGACRLF GFVFYTNLY 
VGAAFLSCV SADRYLAVA HPLRFPGAR PIRSAAAVS ALIWMLELA 
ANAPPLLGE AIHRDRYNH TFCYESYPL SGRGAALAN VGRVLAGFL 
LPWGVMMLC YAGLLRALR GSASCEQRE RRRVRRLAL GLPCVALLC 
YGPYHALLL LRSLVFLVG GCALEERLF PAYHASLAL ATLNCLADP 
ALYCLACPG ARGEVAKVV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8ZFEAOrphanOrphanGPR4Mus musculus---2.562025-02-2610.1016/j.cell.2024.12.001
8ZFDAOrphanOrphanGPR4Mus musculus---2.562025-02-2610.1016/j.cell.2024.12.001
8ZFBAOrphanOrphanGPR4Xenopus tropicalis---3.782025-02-2610.1016/j.cell.2024.12.001
8ZF7AOrphanOrphanGPR4Xenopus tropicalis---3.152025-02-2610.1016/j.cell.2024.12.001
9JVGAOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.762025-02-2610.1016/j.cell.2024.12.001
9JVG (No Gprot) AOrphanOrphanGPR4Mus musculus--2.762025-02-2610.1016/j.cell.2024.12.001
8ZFCAOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.682025-02-2610.1016/j.cell.2024.12.001
8ZFC (No Gprot) AOrphanOrphanGPR4Mus musculus--2.682025-02-2610.1016/j.cell.2024.12.001
8ZFAAOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.962025-02-2610.1016/j.cell.2024.12.001
8ZFA (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.962025-02-2610.1016/j.cell.2024.12.001
8ZF9AOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.562025-02-2610.1016/j.cell.2024.12.001
8ZF9 (No Gprot) AOrphanOrphanGPR4Mus musculus--2.562025-02-2610.1016/j.cell.2024.12.001
8ZF6AOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.982025-02-2610.1016/j.cell.2024.12.001
8ZF6 (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.982025-02-2610.1016/j.cell.2024.12.001
8ZD1AOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.62025-02-2610.1016/j.cell.2024.12.001
8ZD1 (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.62025-02-2610.1016/j.cell.2024.12.001
8ZF4AOrphanOrphanGPR4Xenopus tropicalis---3.052025-02-2610.1016/j.cell.2024.12.001
9J31AOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.052025-01-22doi.org/10.1038/s41467-025-55901-2
9J31 (No Gprot) AOrphanOrphanGPR4Danio rerio--3.052025-01-22doi.org/10.1038/s41467-025-55901-2
8ZFZAOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.32025-01-22doi.org/10.1038/s41467-025-55901-2
8ZFZ (No Gprot) AOrphanOrphanGPR4Danio rerio--3.32025-01-22doi.org/10.1038/s41467-025-55901-2
9BIPAOrphanOrphanGPR4Homo sapiens--Gs/β1/γ22.82025-01-22doi.org/10.1016/j.cell.2024.11.036
9BIP (No Gprot) AOrphanOrphanGPR4Homo sapiens--2.82025-01-22doi.org/10.1016/j.cell.2024.11.036
8ZFJAOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.12024-08-07To be published
8ZFJ (No Gprot) AOrphanOrphanGPR4Danio rerio--3.12024-08-07To be published
9JVMAOrphanOrphanGPR4Xenopus tropicalis---2.362025-02-2610.1016/j.cell.2024.12.001
9JVHAOrphanOrphanGPR4Mus musculus---2.762025-02-2610.1016/j.cell.2024.12.001




You can download a compressed (zip) file with structure(s), 3D outputs (as PyMol and VMD scripts) and numerical data files (as csv and plain text files).

Download 8ZF7.zip



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