Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: hub id, click on each number to highlight the corresponding hub in the 3D visualization.

Hub: the hub being considered.

Avg Int. Strength: the average interaction strength of all the links of the corresponding hub.

Num Of Links: the number of links of the corresponding hub.

Community: the id of the community the link belong to, otherwise 0.

ConSurf: this column reports the ConSurf conservation grades of each hub.

Index Hub Avg Int. Strength Num Of Links Community ConSurf
1R:R:S17 5.7175414
2R:R:P20 5.742515
3R:R:Y24 6.27718
4R:R:L39 6.0575407
5R:R:Y55 4.17167607
6R:R:S62 3.15428
7R:R:D63 7.1675409
8R:R:L64 2.7625407
9R:R:W73 15.504516
10R:R:Y76 8.715616
11R:R:Y77 11.3875815
12R:R:F93 10.516515
13R:R:Y102 8.4725437
14R:R:V103 6.252527
15R:R:F107 6.66333627
16R:R:R115 5.356509
17R:R:Y116 4.045468
18R:R:V119 2.6875408
19R:R:H121 7.588566
20R:R:W142 3.34333629
21R:R:E145 6.475427
22R:R:D161 7.4225411
23R:R:H165 6.4825413
24R:R:T166 9.85415
25R:R:F167 15.175613
26R:R:E170 5.67833616
27R:R:S175 3.495403
28R:R:R186 6.944536
29R:R:F191 8.3125409
30R:R:W195 6.1406
31R:R:M198 2.57507
32R:R:Y202 8.7875409
33R:R:Y238 8.3075458
34R:R:F272 5.008514
35R:R:Y275 4.646506
36R:R:H276 11.3033615
37R:R:L279 6.445416
38R:R:E303 7.83406
39R:R:K306 9.6975406
   

Color ConSurf Grade
      No Conservation data available
      1
      2
      3
      4
      5
      6
      7
      8
      9

Index: link id, click on each number to highlight the corresponding link in the 3D visualization.

Node1 Node2: the two nodes of the corresponding link.

Recurrence: the relative Recurrence in the pool of shortest paths.

Int. Strength: the interaction strength between the two nodes.

Hub1?, Hub2?: "Yes" if the corresponding node has more than 3 links, otherwise "No".

Community: the id of the community the link belong to, otherwise 0.

ConSurf1, ConSurf2: these columns report the ConSurf conservation grades of the two nodes involved in a link.

Index Node1 Node2 Recurrence Int. Strength Hub1? Hub2? Community ConSurf1 ConSurf2
1R:R:D63 R:R:L59 31.51194.07YesNo099
2R:R:F107 R:R:L59 36.345312.18YesNo079
3R:R:F107 R:R:I141 74.44052.51YesNo076
4R:R:C110 R:R:I141 80.50233.27NoNo066
5R:R:C110 R:R:Y55 81.0662.69NoYes067
6R:R:V111 R:R:Y55 87.00572.52NoYes087
7R:R:R115 R:R:V111 87.46852.62YesNo098
8R:R:R115 R:R:S112 91.8565.27YesNo099
9R:R:M198 R:R:S112 97.58963.07YesNo079
10R:R:M198 R:R:P231 98.75063.35YesNo077
11R:R:M199 R:R:P231 98.90635.03NoNo047
12R:R:M199 R:R:W195 99.66358.14NoYes046
13R:R:F191 R:R:W195 1008.02YesYes096
14R:R:F191 R:R:G239 95.2764.52YesNo096
15R:R:G239 R:R:P240 94.97734.06NoNo069
16R:R:P240 R:R:S278 94.35471.78NoNo097
17R:R:S278 R:R:Y241 94.03087.63NoNo077
18R:R:L279 R:R:Y241 93.69855.86YesNo067
19R:R:F167 R:R:L279 43.833112.18YesYes136
20R:R:D63 R:R:S62 32.78652.94YesYes098
21R:R:F107 R:R:S62 32.29433.96YesYes278
22R:R:E170 R:R:L279 27.76385.3YesYes166
23R:R:D63 R:R:N35 52.76810.77YesNo099
24R:R:L64 R:R:N35 51.25782.75YesNo079
25R:R:C294 R:R:E303 24.46164.56NoYes066
26R:R:C294 R:R:Y293 26.48071.34NoNo069
27R:R:L56 R:R:Y293 28.268616.41NoNo089
28R:R:A42 R:R:L56 30.27511.58NoNo068
29R:R:A42 R:R:L57 34.22091.58NoNo065
30R:R:L39 R:R:L57 36.18126.92YesNo075
31R:R:L39 R:R:L64 43.93824.15YesYes077
32R:R:E303 R:R:K306 12.45584.05YesYes066
33R:R:C201 R:R:Y116 14.92096.72NoYes078
34R:R:C201 R:R:S112 17.20933.44NoNo079
35R:R:F97 R:R:W73 18.921440.09NoYes076
36R:R:F93 R:R:W73 22.438215.03YesYes156
37R:R:C168 R:R:W73 18.357710.45NoYes196
38R:R:D75 R:R:Y76 12.30862.3NoYes046
39R:R:F93 R:R:Y76 16.384819.6YesYes156
40R:R:C168 R:R:Y76 16.35548.06NoYes196
41R:R:D81 R:R:Y76 12.304412.64NoYes146
42R:R:V82 R:R:W83 11.35372.45NoNo048
43R:R:N183 R:R:R186 25.09258.44NoYes356
44R:R:N183 R:R:S249 27.41885.96NoNo055
45R:R:S249 R:R:V184 28.52523.23NoNo054
46R:R:L250 R:R:V184 40.13972.98NoNo044
47R:R:L246 R:R:L250 42.1425.54NoNo064
48R:R:L246 R:R:V187 43.13062.98NoNo066
49R:R:H242 R:R:V187 45.082511.07NoNo086
50R:R:F191 R:R:H242 46.045815.84YesNo098
51R:R:R186 R:R:Y102 11.118111.32YesYes367
52R:R:A180 R:R:L253 10.1594.73NoNo034
53R:R:L253 R:R:V184 12.61151.49NoNo044
54R:R:F167 R:R:Y24 16.11986.19YesYes138
55R:R:F97 R:R:L279 24.13342.44NoYes076
56R:R:F167 R:R:W73 22.21110.02YesYes136
Download PSN data

2D representation of the global metapath, ligand(s) interactions and
histograms of path distribution according to several parameters
(click on the image to enlarge it 🔍):

A 2D representation of the global communication in the network.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  

Number of shortest communication paths as a function of the average residue correlation.

Number of shortest communication paths as a function of the average interaction strength of their links.

Number of shortest communication paths as a function of the % of hub nodes in each path.

Number of shortest communication paths as a function of the number of nodes in each path.

Number of shortest communication paths as a function of the % of correlated nodes in each path.


PDB Summary
PDB 9JVM
Class A
SubFamily Orphan
Type Orphan
SubType GPR4
Species Xenopus tropicalis
Ligand -
Other Ligand(s) -
Protein Partners -
PDB Resolution 2.36
Date  2025-02-26 
D.O.I. 10.1016/j.cell.2024.12.001
Net Summary
Imin 1.78
Number of Linked Nodes 239
Number of Links 268
Number of Hubs 39
Number of Links mediated by Hubs 146
Number of Communities 6
Number of Nodes involved in Communities 43
Number of Links involved in Communities 67
Path Summary
Number Of Nodes in MetaPath 57
Number Of Links MetaPath 56
Number of Shortest Paths 42654
Length Of Smallest Path 3
Average Path Length 18.7355
Length of Longest Path 41
Minimum Path Strength 1.09
Average Path Strength 5.94038
Maximum Path Strength 27.75
Minimum Path Correlation 0.7
Average Path Correlation 0.930085
Maximum Path Correlation 0.99
Minimum % Of Corr. Nodes 2.94118
Average % Of Corr. Nodes 37.4004
Maximum % Of Corr. Nodes 100
Minimum Path Hubs % 0
Average Path Hubs % 39.5908
Maximum Path Hubs % 100
AnnotationTypeLinks
Gene OntologyMolecular Function
Gene OntologyBiological Process
Gene OntologyCellular Component
SCOP2Domain Identifier
SCOP2Family Identifier
Membrane Protein Annotations-• Orientations of Proteins in Membranes database (OPM)   • Protein Data Bank of Transmembrane Proteins (PDBTM)   • MemProtMD


Details about the values in these tables can be found in the corresponding documentation page .
PDBsumOpen PDBsum Page
ChainR
ProteinReceptor
UniProtA0A6I8PUB9
Sequence
>9JVM_Chain_R
GLDSVLPPS LYALVFTLG LPANLLALW AAWLQVRKG RELGVYLLN 
LSLSDLLLI CALPPWTDY YLRRDVWGY GPGACRLFG FVFYTNLYV 
GAAFLSCVS ADRYLAVAH PLRFPGARP IRSAAAVSA LIWMLELAA 
NAPPLLGEA IHRDHTFCY ESYPLSGRG AALANVGRV LAGFLLPWG 
VMMLCYAGL LRALRVRRL ALGLPCVAL LCYGPYHAL LLLRSLVFL 
VEERLFPAY HASLALATL NCLADPALY CLACPGARG EVAKVV


Click on each residue to open a popup with some information about it.

ConSurf Conservation Grade (See documentation): 

 n/a   1    2    3    4    5    6    7    8    9  




This receptor, from the same or other species and bound to the same or other ligands, is also present in the following networks:
Show PDB Class SubFamily Type SubType Species Orthosteric Ligand Other Ligand(s) Protein Partners Resolution Date DOI
8ZFEAOrphanOrphanGPR4Mus musculus---2.562025-02-2610.1016/j.cell.2024.12.001
8ZFDAOrphanOrphanGPR4Mus musculus---2.562025-02-2610.1016/j.cell.2024.12.001
8ZFBAOrphanOrphanGPR4Xenopus tropicalis---3.782025-02-2610.1016/j.cell.2024.12.001
8ZF7AOrphanOrphanGPR4Xenopus tropicalis---3.152025-02-2610.1016/j.cell.2024.12.001
9JVGAOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.762025-02-2610.1016/j.cell.2024.12.001
9JVG (No Gprot) AOrphanOrphanGPR4Mus musculus--2.762025-02-2610.1016/j.cell.2024.12.001
8ZFCAOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.682025-02-2610.1016/j.cell.2024.12.001
8ZFC (No Gprot) AOrphanOrphanGPR4Mus musculus--2.682025-02-2610.1016/j.cell.2024.12.001
8ZFAAOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.962025-02-2610.1016/j.cell.2024.12.001
8ZFA (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.962025-02-2610.1016/j.cell.2024.12.001
8ZF9AOrphanOrphanGPR4Mus musculus--chim(NtGi1-Gs)/β1/γ22.562025-02-2610.1016/j.cell.2024.12.001
8ZF9 (No Gprot) AOrphanOrphanGPR4Mus musculus--2.562025-02-2610.1016/j.cell.2024.12.001
8ZF6AOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.982025-02-2610.1016/j.cell.2024.12.001
8ZF6 (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.982025-02-2610.1016/j.cell.2024.12.001
8ZD1AOrphanOrphanGPR4Xenopus tropicalis--chim(NtGi1-Gs)/β1/γ22.62025-02-2610.1016/j.cell.2024.12.001
8ZD1 (No Gprot) AOrphanOrphanGPR4Xenopus tropicalis--2.62025-02-2610.1016/j.cell.2024.12.001
8ZF4AOrphanOrphanGPR4Xenopus tropicalis---3.052025-02-2610.1016/j.cell.2024.12.001
9J31AOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.052025-01-22doi.org/10.1038/s41467-025-55901-2
9J31 (No Gprot) AOrphanOrphanGPR4Danio rerio--3.052025-01-22doi.org/10.1038/s41467-025-55901-2
8ZFZAOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.32025-01-22doi.org/10.1038/s41467-025-55901-2
8ZFZ (No Gprot) AOrphanOrphanGPR4Danio rerio--3.32025-01-22doi.org/10.1038/s41467-025-55901-2
9BIPAOrphanOrphanGPR4Homo sapiens--Gs/β1/γ22.82025-01-22doi.org/10.1016/j.cell.2024.11.036
9BIP (No Gprot) AOrphanOrphanGPR4Homo sapiens--2.82025-01-22doi.org/10.1016/j.cell.2024.11.036
8ZFJAOrphanOrphanGPR4Danio rerio--chim(NtGi1-Gs)/β1/γ23.12024-08-07To be published
8ZFJ (No Gprot) AOrphanOrphanGPR4Danio rerio--3.12024-08-07To be published
9JVMAOrphanOrphanGPR4Xenopus tropicalis---2.362025-02-2610.1016/j.cell.2024.12.001
9JVHAOrphanOrphanGPR4Mus musculus---2.762025-02-2610.1016/j.cell.2024.12.001




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